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Clone Read LE_HBa0142L10_T7_122760

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0142L10_T7_122760
Primer
T7
ID from Seq. Facility
LE_HBa_142_L10-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
652 trimmed for vector and quality, 924 raw
Genbank Accession
DU052893
Sequence
>LE_HBa0142L10_T7_122760 (raw untrimmed)
CCAACCTGGGTACCGGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCCAATTTCTTAAAGGTATAAAAGGTGTGAGAAGAAATTAATGAACAA
GGAGGAGAATAATCTGAATCTAACATTGATCATCTGAATCCTTCTTCTCCCCTCCAATACTAATTCATGGCAATTTCTGCAAATTTGTCCAATTATGGTA
CCCTTCCAACTTCAACCCCACCAGCATCACCACAAACCACACCTCATTCCGCAAGAAAACCACCTCGTCCACCGTTACCACGACCACCACAACCACAACC
ACAACCGCCGGTGCGGACGTCGACGGTCACTAGATCCGACCCGGCAACACGTCGTTCATGGCGTGTGTTCTTTGACTACAACATTATGTCTCTTCCGTAT
AACTATTCTGAAGCGATTACCCGGGTGAGCAGCAACCTTAATTATTTCCGTGTCAATTACGCTATGATAATCCTTGTTATTCTATTCATCAGCCTTGTCT
ACCACCCTATCTCTATGATTGTCTTCTTGGCTATTTCTGTAGCTTGGTTTTACTATTTCCGTGAAGAAGCGATTGTGATTTCGGGAACCCAATTGGATGA
TCGGCTTGTTTTGGTTGGGTTAGGGTTGGTTACTGTTGTTGCCTTGGCGCTTACTCACGTGGGGTCTCAATGTTTTGGTTGTTTTGATAATTGGGTTTTT
CGTTTTGGAATCCTAGGGGCGTTAAGGGGAACAGAGGATTTCTTCTTGGATGAAAATGAGGCTGCGGATGGTGGGTTGCTTTTGGGATGGAGTTCTGTAC
CTATTCAGCTCTGCTGTGGCGTCTGGCTTTTTATTCGATTCAACCTAACAGCTCTGCACAACATCCAACACTGAATAATAGAAATTGCTATGAAATAACT
AAACAAACACAACGCTAGTAACAC
>LE_HBa0142L10_T7_122760 (trimmed for quality and cloning vector)
AGCTTCCAATTTCTTAAAGGTATAAAAGGTGTGAGAAGAAATTAATGAACAAGGAGGAGAATAATCTGAATCTAACATTGATCATCTGAATCCTTCTTCT
CCCCTCCAATACTAATTCATGGCAATTTCTGCAAATTTGTCCAATTATGGTACCCTTCCAACTTCAACCCCACCAGCATCACCACAAACCACACCTCATT
CCGCAAGAAAACCACCTCGTCCACCGTTACCACGACCACCACAACCACAACCACAACCGCCGGTGCGGACGTCGACGGTCACTAGATCCGACCCGGCAAC
ACGTCGTTCATGGCGTGTGTTCTTTGACTACAACATTATGTCTCTTCCGTATAACTATTCTGAAGCGATTACCCGGGTGAGCAGCAACCTTAATTATTTC
CGTGTCAATTACGCTATGATAATCCTTGTTATTCTATTCATCAGCCTTGTCTACCACCCTATCTCTATGATTGTCTTCTTGGCTATTTCTGTAGCTTGGT
TTTACTATTTCCGTGAAGAAGCGATTGTGATTTCGGGAACCCAATTGGATGATCGGCTTGTTTTGGTTGGGTTAGGGTTGGTTACTGTTGTTGCCTTGGC
GCTTACTCACGTGGGGTCTCAATGTTTTGGTTGTTTTGATAATTGGGTTTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.974442
Expected error %
0.711
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g13720.1 Score 102 E Value 1e-22 Identity 16.90% Align. Length 260bp (39.88%) Frame 3
68416.m01732 prenylated rab acceptor (PRA1) family protein contains Pfam profile PF03208: Prenylated rab acceptor (PRA1)
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g55190.1 Score 100 E Value 1e-21 Identity 13.80% Align. Length 347bp (53.22%) Frame 3
68414.m06304 prenylated rab acceptor (PRA1) family protein contains Pfam profile PF03208: Prenylated rab acceptor (PRA1)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM66945.1| Score 102 E Value 6e-21 Identity 16.90% Align. Length 260bp (39.88%) Frame 3
unknown [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB01921.1| Score 102 E Value 6e-21 Identity 16.90% Align. Length 260bp (39.88%) Frame 3
unnamed protein product [Arabidopsis thaliana] gb|AAO50485.1| unknown protein [Arabidopsis thaliana] gb|AAO42194.1| unknown protein [Arabidopsis thaliana] ref|NP_566461.1| prenylated rab acceptor (PRA1) family protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0142L10
Clone
Clone name
hba-142l10
LE_HBa0142L10
P142L10
Clone type
BAC
Contamination
none
Estimated length
97,571
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found