Clone Read LE_HBa0142F08_SP6_122613

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0142F08_SP6_122613
Primer
SP6
ID from Seq. Facility
LE_HBa_142_F08-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
695 trimmed for vector and quality, 932 raw
Genbank Accession
DU052786
Sequence
>LE_HBa0142F08_SP6_122613 (raw untrimmed)
CGAAAGCTTTCTGCTTGTGCTCATTAAATAAAGGAGGCATAGTACCAAGAAAGATCACAGACATCAGGATGTGTATAACATTATTCAAGACAAAAGCTAA
ACCTTTGATCTTGGAACATAAGCATATTCTTAGTTTTCCTAAGCCGTAGACCTTATCAGTTCCGCTTGGATTGCAGATTATATTTCCCATATACACAAAG
AACAAGAGTTAAAGTGTCTGCTACCTTTTCCTAAGAGCTTGCAAACATATAATATGCACTCACTAGCCAGACAATTTTAAATACTCAAAAATCGTTGAGA
GAAGCATTATTTTAACATGATGTATTTTCTGGAAAACTTACTCGTCACCAATTTGTCGCTTCTCAATCTGAGAAATGTCATAGTAACGCAAGGCAGCTTC
CAAGAATTTTCTCTTCAAATCCAAAATCCTAGCATAGCAAACCTGAAATAATCATTCAGGAAATAGTTGAGTTGACATATTAGCCAGTGACGGTGACATG
CTCAAAAATAAAAAATGCCCTAGATCATATGATAACAACCTTGTACTGCAAATTCAATACTTCATTCTTAATGTTGTTAACTTTAAAGGAAGCTTTATTT
ATAAACGCTTCTGCATTAACTGCATCATCATCCTGCCAAAGAAGGAATTGGACACTGTTAGAAACTTAGAATGCCAAAGAGAACCAAAATAATGGAAGTA
GACTGAACTTTTTCAGATCAATGCATATAAACAGCAGACAATAGCAGGGTGCATAGTAGCAGTACAGGAACCCAATCTACAACTCTTATTTTCCTTTTGA
TTGTAAGGCAGAACAATACATTGAAAAGGAACCCAAATACTTTAAATGTTCTTTCTACATTAGTTACCAGTCCCATTTACCCCGTAAAAGGTTTTTTCTT
AAGAAAAAAAAAACTTGGGTCATTTGTAAAAA
>LE_HBa0142F08_SP6_122613 (trimmed for quality and cloning vector)
GTGCTCATTAAATAAAGGAGGCATAGTACCAAGAAAGATCACAGACATCAGGATGTGTATAACATTATTCAAGACAAAAGCTAAACCTTTGATCTTGGAA
CATAAGCATATTCTTAGTTTTCCTAAGCCGTAGACCTTATCAGTTCCGCTTGGATTGCAGATTATATTTCCCATATACACAAAGAACAAGAGTTAAAGTG
TCTGCTACCTTTTCCTAAGAGCTTGCAAACATATAATATGCACTCACTAGCCAGACAATTTTAAATACTCAAAAATCGTTGAGAGAAGCATTATTTTAAC
ATGATGTATTTTCTGGAAAACTTACTCGTCACCAATTTGTCGCTTCTCAATCTGAGAAATGTCATAGTAACGCAAGGCAGCTTCCAAGAATTTTCTCTTC
AAATCCAAAATCCTAGCATAGCAAACCTGAAATAATCATTCAGGAAATAGTTGAGTTGACATATTAGCCAGTGACGGTGACATGCTCAAAAATAAAAAAT
GCCCTAGATCATATGATAACAACCTTGTACTGCAAATTCAATACTTCATTCTTAATGTTGTTAACTTTAAAGGAAGCTTTATTTATAAACGCTTCTGCAT
TAACTGCATCATCATCCTGCCAAAGAAGGAATTGGACACTGTTAGAAACTTAGAATGCCAAAGAGAACCAAAATAATGGAAGTAGACTGAACTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.950615
Expected error %
0.1181
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g42970.1 Score 67 E Value 2e-23 Identity 71.10% Align. Length 330bp (47.48%) Frame 2
68418.m05241 COP9 signalosome complex subunit 4 / CSN complex subunit 4 (CSN4) (COP8) (FUS4) FUSCA4, COP8, CSN4; identical to CSN complex subunit 4 [Arabidopsis thaliana] GI:18056659, COP8 [Arabidopsis thaliana] GI:5802627; contains Pfam profile PF01399: PCI domain; identical to cDNA CSN complex subunit 4 (CSN4) GI:18056658
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAQ07984.1| Score 74 E Value 3e-12 Identity 22.60% Align. Length 167bp (24.03%) Frame 2
COP8-like protein [Lilium longiflorum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAQ14545.1| Score 74 E Value 3e-12 Identity 22.60% Align. Length 167bp (24.03%) Frame 2
COP8-like protein [Lilium longiflorum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0142F08
Clone
Clone name
hba-142f8
LE_HBa0142F08
P142F08
Clone type
BAC
Contamination
none
Estimated length
114,093
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found