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Clone Read LE_HBa0142D02_SP6_122559

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0142D02_SP6_122559
Primer
SP6
ID from Seq. Facility
LE_HBa_142_D02-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
696 trimmed for vector and quality, 887 raw
Genbank Accession
DU052747
Sequence
>LE_HBa0142D02_SP6_122559 (raw untrimmed)
ACGGATAGCTTTCACCAGATAGATATTTGGAGTACTCATAAATTTGTTGTCTTGCATTTTGAACTTGTTTAGACTCTTTTTAATGTATTTCTGCTGGCAT
ATGAAAATTCCATCATTGTACTATAATAATTCCATGCCAAGAAAGTACTCCATGACTCCAAGATCAGTCATTTCAAAGATTTTCTCCATTTCATCCTTGA
ACCTTTGGATTAGCTTAATTTTGCTTCCTGTCACAAGCATGTTATTCCCATAAATTGAGACAATTAAGGACTCACTTGCAGCAATGACTTTCACATATAA
AGTAGCTTCACTTTGACTTCTACTAAATCCAAGTTGGATGAGATGATTGTCCATCCTCTCATACCATGCCCTTGGGGCTTGTTTTAGGCCATACAAGACC
TTTGTTAAGAGATAAACTTGATCCTCTTTTCCGGGAGTTGAGAAACCATCAGGTTGCTCTACATAGATCTCTTCAGCAAGAAAATCATTCAAGAAAGCCG
ATTTTTTGACACCAAGTTTATGAATCTGCCAGGAACTATGAGATGCAAATGAAAGAATAAGTTTGATGATGTCATACCTTGTTAAAGGAGCAAATGTTTC
CTGGTAATCCATACTATATTATTGTGTGTATCCCTTCACCATCAATCTAAACTTATGTTTGCAAATTGGTCCATCAAGATTGAGTTTTGTCTTGAAAATC
CATTTTTACACCAATCACCTTTCTATTTTTAGGTCTGTCAACAAGTTATCAGGTTCTATTCTTCCTGATCATGTCAGGACATCAGGCATAGCTCTCCTCA
TGCCTGAAAAGCTTGTGCTTCAGCAATAGCTTGTGGGGTCCGAGGTAATAAGTCCCCCGGTGAACAATCACTTTGTAGGAGCGAGTT
>LE_HBa0142D02_SP6_122559 (trimmed for quality and cloning vector)
AGTACTCATAAATTTGTTGTCTTGCATTTTGAACTTGTTTAGACTCTTTTTAATGTATTTCTGCTGGCATATGAAAATTCCATCATTGTACTATAATAAT
TCCATGCCAAGAAAGTACTCCATGACTCCAAGATCAGTCATTTCAAAGATTTTCTCCATTTCATCCTTGAACCTTTGGATTAGCTTAATTTTGCTTCCTG
TCACAAGCATGTTATTCCCATAAATTGAGACAATTAAGGACTCACTTGCAGCAATGACTTTCACATATAAAGTAGCTTCACTTTGACTTCTACTAAATCC
AAGTTGGATGAGATGATTGTCCATCCTCTCATACCATGCCCTTGGGGCTTGTTTTAGGCCATACAAGACCTTTGTTAAGAGATAAACTTGATCCTCTTTT
CCGGGAGTTGAGAAACCATCAGGTTGCTCTACATAGATCTCTTCAGCAAGAAAATCATTCAAGAAAGCCGATTTTTTGACACCAAGTTTATGAATCTGCC
AGGAACTATGAGATGCAAATGAAAGAATAAGTTTGATGATGTCATACCTTGTTAAAGGAGCAAATGTTTCCTGGTAATCCATACTATATTATTGTGTGTA
TCCCTTCACCATCAATCTAAACTTATGTTTGCAAATTGGTCCATCAAGATTGAGTTTTGTCTTGAAAATCCATTTTTACACCAATCACCTTTCTAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.948365
Expected error %
0.5598
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 145 E Value 2e-35 Identity 12.70% Align. Length 620bp (89.08%) Frame 2
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38797.1| Score 305 E Value 5e-82 Identity 75.60% Align. Length 674bp (96.84%) Frame 2
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD17409.1| Score 228 E Value 1e-58 Identity 16.70% Align. Length 674bp (96.84%) Frame 2
putative retroelement pol polyprotein [Arabidopsis thaliana] pir||F84531 probable retroelement pol polyprotein [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0142D02
Clone
Clone name
hba-142d2
LE_HBa0142D02
P142D02
Clone type
BAC
Contamination
none
Estimated length
112,627
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found