Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0054F10_T7_12163

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0054F10_T7_12163
Primer
T7
ID from Seq. Facility
LE_HBa_054_F10-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
5 trimmed for vector and quality, 1555 raw
Sequence
>LE_HBa0054F10_T7_12163 (raw untrimmed)
AGTAGTTGAAGTGTGAGTGGACACACAGTATGGGAGAACACAGTTAGTGATAATATATCATAACAATAGTCAAGAGTTGAGTGCTTAGACNCCTCGCGTA
TTACTNATAGATAAGTAGATATGTGCACGCCCCCCCCTCTTAACTTAATCTACATCAGTTCAGCTACAATAGAGCTCCAGTAAAGCATGAGTTCATGCGC
GGGCGCACCCCACTGAACGCGCATAATCCTTCGCATTCCGCTATNATACTATAATAGTAAGCGTGCACGGTAGGTCTGTGGCACGCTCGAACAGAGCGTG
GGGTACAAGCGGGACAGGGNGAGTGCGTCTTTTGTGTGTANTGCGTGACGACTTATACTCTGGGCATGTGTACTCTTTAGCGTGTATCGTCCGCCTCTAG
ATTTGTCGCTCCGCGTATTTGATGTGGTATACGGATATATATGTGGTGTTGATTGTGCACCGCGCTTCGTCCACAGAATAGCGTATACTGTGTGACACTN
CTNCAGCATCACACTCTTCCATAANGTCGCTGCTAGTCATTTATGTGGGTATGTCACTGNACATGTATAGCATAAGTTACAATATCTTTGTATGTATAAG
CAATATAANTATAATGGAGTGTACGTACCTGCATGATCTTGTATATAGTCGTTGTATTATTNTGCATACTGTATGTTCTATGACTGAAGAACTACATAAC
ACGTACACAACTTGATTTATATATTAGCGAGACGTGTGATACTTGAAATCATCATGTATATGCATCTAAATCATATGCATATGCGAGTACTCGTGTGGNT
TGATGATGTGGTCATGAGCGCATCTAATGGACGTGCGTTTGATGAAGGATTTCACACTGAGAGCGACGACGACCCGTAATGTATTATAGATGCCCATAGT
ACCTCGCAAACTTAGACTCACTGCAACGTTTATCCTGATGCACCCTTCTTGATCTACGTCTATGCGCTCTTTTATCTCCTACACACCACGTCGCTGTCGC
AGTCTTGCTTACTGGTCCACATACGTCTGTGTATATATGTTCACATCGGCAACATTAGAACTGAAGCAGCCAGGGAGCAAGAGTACGTACAGTGTACATG
TGTGTCTCGGACGCAAACTCATACNCACATAGACATCGAATGGATAAGTATGTTAACATTCGTATGATGTAGATTGGTGTATGGTGCGTGTCTTACGCTA
TGTAGTTGCCGTCAGATCTAATTATGATGTTCACNCANACTTCATTGCCTTATTTACTCATCGGCTTACGTACTCACTATTGACAGATAGCATATNTAAT
CTAGTACGATGACTTGTATATCGAAGACTGTATAGGCTTACTAGCAACATGTACTGTAGACAATACCTACATCGCTGCATATATGAATGATACGAAGANC
GATGAAACTGCTTGATCATGCTGACTGCGCTTATCAAACGCGTTATTNCACAAGCGCACGACACGTGAGAAACTGGCGCAATTTCATACTNGTTGTGCGG
TCTGGANCGTGCATATTTTACACGGAAGAAGCAGTATGTTTGTGGCAGCGATGNC
>LE_HBa0054F10_T7_12163 (trimmed for quality and cloning vector)
GACTG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.69409
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0054F10
Clone
Clone name
hba-54f10
LE_HBa0054F10
P054F10
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found