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Clone Read LE_HBa0011I05_SP6_121147

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0011I05_SP6_121147
Primer
SP6
ID from Seq. Facility
LE_HBa_011_I05-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
774 trimmed for vector and quality, 995 raw
Genbank Accession
DU067665
Sequence
>LE_HBa0011I05_SP6_121147 (raw untrimmed)
AAAAAATAATTGTTTTCTNCCGCTATGTGATACTCACTGCTTCTGATGGGTCTGTTGAGCACAAAGAAAGCTGCTAAGTCTACTCCGTTCCTCGTGGTGT
TGCCTGTTTTAACCTTAACATTTCACAAGTATTGTAAGAGTCGATTTGAACCTGCATTCAGAAAGTATCCCATTGAGGTAACCTTCACTTGCTAGTCATA
TATTACGTCTTTCTCAACACATTTCTGGCATATTAACACATGCTTCCGTTTCTTAATATTTCTCCGTGATGAATCTTGCAACCACTTCATTTAAAAGCTT
TAGCTGACAGAGAGAACAACAACTTTTGTTTATTCATTATAGGGAACTTTGTCTGAAAGCTTAAGCGGATAGAGAGAACATCCACTAGTCTATGTACTTA
TATCGTCAACAAATAGTAAAGGAATAACATCTCACATCTCATGATCATTTTCAGGAAGCAATGGAAAAGGACTTGCAAGACCGATCTTCTGAATCTGACG
CCAACTTGAAAGCATACTTGGCTGATGCATATCTACATCCTATTTTCCACTCATTTGAAGAGATTGAACTGGAGGACGTTAAAATCGACAAAAAGCCTCC
TCCTCACAGCCCCAGCCCCCCACTGAGTGAACTCAGTTCTCCATCACCAACTCATGATGCCAAAGACCTCAAGGAAGTCGAGCCATCTGGGACGTCTCAA
ACATCTCACAACGTCCAGCACTATGAAGTCGGACAACCAGGGGACTTGTTTCACTATGAATATGAACAAACCAGTCATGTATATCACTATGATTACCAGT
CACAGTATCACCACGATTCGCAATATCAACATAGCGGATATCATTATTGAAGCCAGGTTTAATCCTTAGTTTGATTGATGTTTAGCAGCTTAATTGCCTT
AACCACCTCACTTAAGACCAGTTTAACATTTTGCTAAAAGGGCCAGGCCTTCTAGTTAAATTTTTTGTGTCCCCAATGTAATGCTTTTAATCTTT
>LE_HBa0011I05_SP6_121147 (trimmed for quality and cloning vector)
CACTGCTTCTGATGGGTCTGTTGAGCACAAAGAAAGCTGCTAAGTCTACTCCGTTCCTCGTGGTGTTGCCTGTTTTAACCTTAACATTTCACAAGTATTG
TAAGAGTCGATTTGAACCTGCATTCAGAAAGTATCCCATTGAGGTAACCTTCACTTGCTAGTCATATATTACGTCTTTCTCAACACATTTCTGGCATATT
AACACATGCTTCCGTTTCTTAATATTTCTCCGTGATGAATCTTGCAACCACTTCATTTAAAAGCTTTAGCTGACAGAGAGAACAACAACTTTTGTTTATT
CATTATAGGGAACTTTGTCTGAAAGCTTAAGCGGATAGAGAGAACATCCACTAGTCTATGTACTTATATCGTCAACAAATAGTAAAGGAATAACATCTCA
CATCTCATGATCATTTTCAGGAAGCAATGGAAAAGGACTTGCAAGACCGATCTTCTGAATCTGACGCCAACTTGAAAGCATACTTGGCTGATGCATATCT
ACATCCTATTTTCCACTCATTTGAAGAGATTGAACTGGAGGACGTTAAAATCGACAAAAAGCCTCCTCCTCACAGCCCCAGCCCCCCACTGAGTGAACTC
AGTTCTCCATCACCAACTCATGATGCCAAAGACCTCAAGGAAGTCGAGCCATCTGGGACGTCTCAAACATCTCACAACGTCCAGCACTATGAAGTCGGAC
AACCAGGGGACTTGTTTCACTATGAATATGAACAAACCAGTCATGTATATCACTATGATTACCAGTCACAGTAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.973526
Expected error %
0.0951
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g32090.1 Score 69 E Value 2e-12 Identity 11.40% Align. Length 350bp (45.22%) Frame 2
68414.m03949 early-responsive to dehydration protein-related / ERD protein-related similar to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0011I05
Clone
Clone name
hba-11i5
LE_HBa0011I05
C08HBa0011I05
P011I05
Clone type
BAC
Contamination
none
Estimated length
81,895
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found