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Clone Read LE_HBa0011G04_SP6_121098

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0011G04_SP6_121098
Primer
SP6
ID from Seq. Facility
LE_HBa_011_G04-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1115 raw
Sequence
>LE_HBa0011G04_SP6_121098 (raw untrimmed)
CACTCACGTAACGTGAGGAGGGGTGCTCTCCTTTTTTATTCCGAGCGAGTGNATGCGCTTAAGGCTGNCCGGCATCTGGAATGGAGCATCTGTACCTGAC
TGCACATATGACTGGATGCTCCGCGGCGTGGAGCGTTCACGCGTGCATGTCTTTGCCGACCGTTCNAGCGTAGTACAACGATGATAGATTTCCTAGTATC
TGATGCGTCCTGCCGCCATACTGTCATAATCGGTCTCTGCGACTCTGCCGCACTGAAAGTCTGTCGCGTGTGTATGACACGAGCCTCCATATGCGTAGCA
GGAGCAGCTACGCAAACCATCCCACTGACTTAGCGCATTAATGTGGTATGTTGTCAGCTGGATACTATGGTGCAAGCTCGCCGAATCCGAACACAATGCA
ATATAGACAGTACGCTCGCATGACACTCGACCTCGTGCTTCTTATTGCTCGCTGGTGTCTCGCTCTAATAGTAATCTACTTATGCTCACATTCAGGTGGC
GACGACATCTACTGTCGTGAAGGAGAATCGTGTTGCATCAAATCACTGATATCATCATCGCGTCGTGCCCTATCATAGCTAGTGTATATGCACTTCTCAT
CTCACATTCCCGATACCATATCGAGACTTACTTCGTAAGATTCTATCTTCAAACAAAGCTGTTCTAACTACTAATCTGGTTATTGTGCTGCCAATCGTCT
CAGCATGCNTCCAGATCACAGTGCATTACCTATCAAGTGGAACATGCACTACGGTGGGTGAGGAGTGCGGCAAGGGGTTAGTGCTGAAGCACGAGACGAT
TCTGAACATCANTTAGCTGTGAGGTTGATTATTGTTTGTACAAAGGACTCTTACGCGCTCACATCACTGTATCAGTTGGAATACTNCGGAACGTACTAGC
TGCTTGACTGCATTTAGGTTGAATATAGCAAGATCCTCGAGGTTATGACCTCGTTCGGGCGCACGATACAATATCTCACTTGGTATGCTAACGTTACATG
TNTGACATTGCAGGTTGAATGGTCTCTTGANTCTCTATGCTGTAATATGGTCTTGTNGCACTGACATCGATTGTGCGNTAGTCGCTANTCGTGTTGCACT
CTGACTGTTGCGATG
>LE_HBa0011G04_SP6_121098 (trimmed for quality and cloning vector)
CT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.8922
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0011G04
Clone
Clone name
hba-11g4
LE_HBa0011G04
C02HBa0011G04
P011G04
Clone type
BAC
Contamination
none
Estimated length
112,868
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found