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Clone Read LE_HBa0011B13_SP6_120987

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0011B13_SP6_120987
Primer
SP6
ID from Seq. Facility
LE_HBa_011_B13-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
688 trimmed for vector and quality, 967 raw
Genbank Accession
DU067555
Sequence
>LE_HBa0011B13_SP6_120987 (raw untrimmed)
AAAAAAAAAATTGTTTCCTTTAGCTAGTGAGCANNNNNNNNNNNNNNNNNNNNNNANNNNANNANNNNNNAANTNNNAANCNNAANANNTNNATTNAATT
ACNAAAATNAAATTNACAACCAATTCAAACTTAATAATCATCTATAAATACAAAACTTTTTCTTATTAGGTTTGTCATAAATCAAACAAAAGGAAATATC
ATTTNATCATATATAATTTCATAAAATATTTANTAATGATAATTAAATTTCTATTANCAATGACTTTCAAGTCATTTGTTTTAACCATTTCCATAATGGC
TGTTTTATTTTCATTGAGCCATGCATCTGATCCCAGCCCTCTTCAGGATTTTTGTGTAGCTGTTAATGACTCCAAAAATGCTGGTAACTTACCAAATTTT
TTAAAAAAATCATCTTTACTATTTTTATCAAGTCTTTTTGTTAATTTTTGTCTAGTTAAAATTAAACTTGTTCCTTTTTTTTTTTGCAGTTTTCGTGAAT
GGAAAATTTTGCAAGAATCCATTGGATGTCAATGCTGATGACTTCTTTAGGCCCGGGCTAAACCTAGCTGGAAACACTTCAAATCAACTTGGATCTGCTG
TAACTGCGGTTAACGTCAACAACTTGGCAGGACTCAACACTTTGGGCATTTCTTTAGCTCGTATTGATTTTGCACCATACGGTCTGAACCCACCTCATAC
TCACCCCCGAGCAACTGAAGTTCTTACTCTCTTCGAGGGTACGCTCTACGTTGGATTTGTCCTTTCGAACCCTGGTCCAAATATGAAGAACAAACTCTTT
ACAAAAATCTTGCATCCTGGAGATGTGTTTGTTTTTCCAGTAGGGCTAATTCCTTTCCAATTTAACGGGGAAAAACTAATGCAGTTGCTTTGCTGGACTC
ATTACCAAAACCAGAATCATTCCAATGAAATGCATATTTGATCAAACACCATCAAGAAGAGTTCTGC
>LE_HBa0011B13_SP6_120987 (trimmed for quality and cloning vector)
CAATTCAAACTTAATAATCATCTATAAATACAAAACTTTTTCTTATTAGGTTTGTCATAAATCAAACAAAAGGAAATATCATTTNATCATATATAATTTC
ATAAAATATTTANTAATGATAATTAAATTTCTATTANCAATGACTTTCAAGTCATTTGTTTTAACCATTTCCATAATGGCTGTTTTATTTTCATTGAGCC
ATGCATCTGATCCCAGCCCTCTTCAGGATTTTTGTGTAGCTGTTAATGACTCCAAAAATGCTGGTAACTTACCAAATTTTTTAAAAAAATCATCTTTACT
ATTTTTATCAAGTCTTTTTGTTAATTTTTGTCTAGTTAAAATTAAACTTGTTCCTTTTTTTTTTTGCAGTTTTCGTGAATGGAAAATTTTGCAAGAATCC
ATTGGATGTCAATGCTGATGACTTCTTTAGGCCCGGGCTAAACCTAGCTGGAAACACTTCAAATCAACTTGGATCTGCTGTAACTGCGGTTAACGTCAAC
AACTTGGCAGGACTCAACACTTTGGGCATTTCTTTAGCTCGTATTGATTTTGCACCATACGGTCTGAACCCACCTCATACTCACCCCCGAGCAACTGAAG
TTCTTACTCTCTTCGAGGGTACGCTCTACGTTGGATTTGTCCTTTCGAACCCTGGTCCAAATATGAAGAACAAACTCTTTACAAAAAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.945695
Expected error %
1.5564
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g39110.1 Score 139 E Value 2e-41 Identity 66.00% Align. Length 546bp (79.36%) Frame 3
68418.m04732 germin-like protein, putative nearly identical to SP|Q9FID0 Germin-like protein subfamily 1 member 14 precursor [Arabidopsis thaliana]
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g39120.1 Score 138 E Value 1e-38 Identity 66.00% Align. Length 534bp (77.62%) Frame 3
68418.m04733 germin-like protein, putative similar to germin -like protein GLP6, Arabidopsis thaliana, EMBL:ATU75194 [SP|P92997]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB10832.1| Score 139 E Value 1e-39 Identity 66.00% Align. Length 546bp (79.36%) Frame 3
germin-like protein [Arabidopsis thaliana] ref|NP_198727.1| germin-like protein, putative [Arabidopsis thaliana] sp|Q9FID0|GL1E_ARATH Germin-like protein subfamily 1 member 14 precursor
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAB51572.1| Score 138 E Value 1e-38 Identity 65.00% Align. Length 537bp (78.05%) Frame 3
germin-like protein [Arabidopsis thaliana] sp|P92997|GL1D_ARATH Germin-like protein subfamily 1 member 13 precursor
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0011B13
Clone
Clone name
hba-11b13
LE_HBa0011B13
P011B13
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found