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Clone Read LE_HBa0054D24_T7_12095

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0054D24_T7_12095
Primer
T7
ID from Seq. Facility
LE_HBa_054_D24-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
596 trimmed for vector and quality, 717 raw
Sequence
>LE_HBa0054D24_T7_12095 (raw untrimmed)
AGCTCGGACCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGCTAGACAGATGAAAATTGTCCTATTAAGGTGATAGNATGTNAAAGATGT
ATATAGGAAGACCTTTAAAGAGAANTNTGTTAATGTAATATATAGTGAAATTTAGTTTGTAATAGTTTGGAAATGATTTTTTTGATACGAGTTTATGTTT
TTTTTTTTTTGTTGATTTAAAATATATATTGAAAGATAAAATTATTTGTATGATTAAAGTTGATGTAGATAAGTTTGATAGTTATTTATATGTTTAGTTA
ATAGTTTGGTGGAAATGTATTGNAAGATGGGAATGAGTATTGTGTAAATTATTGGAATTATGATTTTGATGGTTATTTTATTGGTATTGTTTTTTTTTGC
GTTTAAAAATAAGTGTTTATTATTANAATTGNATTNGATATGNAGAGAANAAGTAAANATATATGTTGTTTTTTAGAGAGTAAGATAAAGAATGAAAATT
TAAGTGTAAAGAGGTAGTNATTTGTTNAGTATATGNAAGGGGAATGAATAAATNAGATTTATTGTTGGAGAATTTTTGAGAATTAATTAAGTTTTTTTTN
TAATGTATATAATATATGAATATGTAGTATGAATAAGTTATGTAGGAGAAATTTTTGAAGTAATTATTTTTAAAGTTTTTTTTGGGTGAAGGTAATGAAA
AAGGATAATTTGGGATT
>LE_HBa0054D24_T7_12095 (trimmed for quality and cloning vector)
AGCTTGCTAGACAGATGAAAATTGTCCTATTAAGGTGATAGNATGTNAAAGATGTATATAGGAAGACCTTTAAAGAGAANTNTGTTAATGTAATATATAG
TGAAATTTAGTTTGTAATAGTTTGGAAATGATTTTTTTGATACGAGTTTATGTTTTTTTTTTTTTGTTGATTTAAAATATATATTGAAAGATAAAATTAT
TTGTATGATTAAAGTTGATGTAGATAAGTTTGATAGTTATTTATATGTTTAGTTAATAGTTTGGTGGAAATGTATTGNAAGATGGGAATGAGTATTGTGT
AAATTATTGGAATTATGATTTTGATGGTTATTTTATTGGTATTGTTTTTTTTTGCGTTTAAAAATAAGTGTTTATTATTANAATTGNATTNGATATGNAG
AGAANAAGTAAANATATATGTTGTTTTTTAGAGAGTAAGATAAAGAATGAAAATTTAAGTGTAAAGAGGTAGTNATTTGTTNAGTATATGNAAGGGGAAT
GAATAAATNAGATTTATTGTTGGAGAATTTTTGAGAATTAATTAAGTTTTTTTTNTAATGTATATAATATATGAATATGTAGTATGAATAAGTTAT

This is probably not a useful sequence.

Problems:
  • High predicted error rate
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.85208
Expected error %
10.6447
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0054D24
Clone
Clone name
hba-54d24
LE_HBa0054D24
C03HBa0054D24
P054D24
Clone type
BAC
Contamination
none
Estimated length
135,182
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found