Clone Read LE_HBa0051O23_T7_11853

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0051O23_T7_11853
Primer
T7
ID from Seq. Facility
LE_HBa_051_O23-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
495 trimmed for vector and quality, 801 raw
Genbank Accession
DU030685
Sequence
>LE_HBa0051O23_T7_11853 (raw untrimmed)
CCCCCCTTTTTTTTGGGGGGGGGAGCCTACGTCGGACGATACATCAGAAGGCATTCTTCTTTGGGCTGACAGATAATGGATGCGACCCTTCTGGCAAATG
AGTTGGTGGACTCGAGGGTGAAACAAAATAAACCAGGAGTGCTTTGCAAGCTCAACATTGAGAAGGCCTACGACCATGTGAATTGGGCTTTCCTCCTCAA
ATTATTGAGAGATATGGGGTTTGGCGACAAATGGGTCAACTGGATTGAATTTTGCATATACACTGTGAAATTTTCGCTCATAATTAATGGTAATCCAGAG
GGTTTTTTTCAATCACAGAGAGCTGCGACAAGGTGACCCCATGCCACCTTTTCTGTTCATTCTAGCTAAGGAAGGCCTAAACTTCATGATTAGAAAAGCA
AGGGAGAATGGATGGATTAGAGGTTTTTGTGCTAACATAAATATGAACAACGCTATGGAGGTATCTCATCTACTGTATGCAGATGACTTCCTTGTATTTT
GTGATGCAGAAGTTACACAAATAAGGCATATGAGAGCTATCCTAACAATCTTTGAGGGCATTTCGGGACTTCATGTCAATTGGCACACAAGCTGCCTCTA
TCCAGTGAACCAAGTCCCTAATATGCAGACCCTAGCTGAGAAATCAGGATGCCAAGTGCCTCCCTTCCTACTTAATACCTAGGAATGTCTCTTGAAGCAA
AAAATAAAAACTAGAAGTGTGGTGTGAGGTTCTGGAAAGAATTGAGGAAAATAGCAAGATGAAAAACCCATACCCACCTTTGGTCGGAGGGCGAATTTTA
A
>LE_HBa0051O23_T7_11853 (trimmed for quality and cloning vector)
CAGATAATGGATGCGACCCTTCTGGCAAATGAGTTGGTGGACTCGAGGGTGAAACAAAATAAACCAGGAGTGCTTTGCAAGCTCAACATTGAGAAGGCCT
ACGACCATGTGAATTGGGCTTTCCTCCTCAAATTATTGAGAGATATGGGGTTTGGCGACAAATGGGTCAACTGGATTGAATTTTGCATATACACTGTGAA
ATTTTCGCTCATAATTAATGGTAATCCAGAGGGTTTTTTTCAATCACAGAGAGCTGCGACAAGGTGACCCCATGCCACCTTTTCTGTTCATTCTAGCTAA
GGAAGGCCTAAACTTCATGATTAGAAAAGCAAGGGAGAATGGATGGATTAGAGGTTTTTGTGCTAACATAAATATGAACAACGCTATGGAGGTATCTCAT
CTACTGTATGCAGATGACTTCCTTGTATTTTGTGATGCAGAAGTTACACAAATAAGGCATATGAGAGCTATCCTAACAATCTTTGAGGGCATTTC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.952353
Expected error %
0.0977031
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAL78659.1| Score 114 E Value 2e-29 Identity 58.30% Align. Length 336bp (67.88%) Frame 2
reverse transcriptase [Fagus sylvatica]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD32950.1| Score 73 E Value 7e-24 Identity 37.50% Align. Length 483bp (97.58%) Frame 2
putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] pir||C84554 hypothetical protein At2g17610 [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0051O23
Clone
Clone name
hba-51o23
LE_HBa0051O23
C02HBa0051O23
P051O23
Clone type
BAC
Contamination
none
Estimated length
95,542
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found