Clone Read LE_HBa0188O10_SP6_113962

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0188O10_SP6_113962
Primer
SP6
ID from Seq. Facility
LE_HBa_188_O10-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1562 raw
Sequence
>LE_HBa0188O10_SP6_113962 (raw untrimmed)
CGCTTTCATTTACCGGGCGTATTATGCAGGACTTACACATTGCAGCTCCTAAAGGTCTGTAAGCATGATCTCCTTCTACGCGTATTGTTCTTAAGTGGAC
TACTGTNCTTCACGCGACTTTATAAATTGTGCACCCTCAACTACACGAAGGTACACGTGTNGTAGACTACATGGTAGTCATCAGATATAACACGTAAATC
TAGCTAGCGGCCATATGTGATAGCAAGTTCGCTNACATTCTTNGGTTATATTGATAGATCTTTGTAGATCATTGGTCTGTTCCATCATAGAGAAGACTCT
CACTTTCACATAGCCGTGTGTGCGACGTATGTATTACTTATAATTAGTAGTGCGCGTAGGCACGTTAGAACCTGCAAAACATAATAGACAGAATGAATAA
GGCGTATCTTCTTGTATCNATTTTCTCATATCCTTGTGTTGTAGCTGCTAGATTGTATCTCTGTCTCANTGACTCTGTTGTTCGTAATACCTGCATATGA
GGATGATTATTGTCCAGTCATCAGATAATTGACTAACCGGTAANGTCAGTAGACGCAGATATATATTCACAAGATTATATACAGTCATGATCACACATAC
TNATCTGTCGCTCGCTCTCACCTGTCTTTCGTCATCTGTCGTGGTGCCATACACCTTATCATTGAACTATGAGATAATATGTGTAAGCGCGTGAGGAATA
TTAGCATGAACGGTAAATGAACGCAGAGAATCGTACAGTGATGGACNAGGGATGAGTTGACTGATTGATTGAGTCTATGTTCAAANGTTAGTGTGNGGAT
GAGCTGCTCGTAGATTGTGTAGACACGTCCTNCGCTNGCNTGTCTGATAGTGANACATGGGTGTAGTAGAANCATAAATGTCACGTCACACAGATTAACT
TGGTAGCCGCACGCTGTAGGTCTGCTGAACGATACCATGCATCGCACGACTAGTGGAGTGTTACTACTCTAATGTGTTGTATTATATGATCATACGAATA
CTACGAAATGCTCTTAGTTGCTATATAGCGTGAGNCTAGCCCTGGCGTGACGGCAATGATCTCTCCATGCCTGCTGCTAGAATATGTCGTNCTATNCTAC
ATGACTCGGCTCGTGAGAACTTGTNACTGCGCCACTGATGGAGAAAGATGACTCTCACACGTACGCTACCTTGCCGCTCTGACAGCAGGCCACGAAGCCA
ACTCTTCACGCATGAACACTACCCAGCTNCGCTTGGCGATAACCGAACCTTGACTGCACTCTCTGTGNCGCCTCGTTCATGTACCACTGCGTGAGCTAAT
CGTCCGAGTCTCGTCTTTGCTCTACACATTTGGGAGAACTTACCGTGCATTACTGTGTGCATGTGAGCTGCATCACTTAGTTCTCCTGCTACCTGTAGAC
ATCTAGCTGGTATGTGTAGTTTACNTACATGACATACTTTATGTCNTNATCTTACTGTTGCTCNTATATGACTATTTATAGTTCTCGTACGTCGCTTAAT
CTGTNCTATGNCTATANTATATCCTCCTTCACCTCTATCTTAGATGCGACGACACTATACAT
>LE_HBa0188O10_SP6_113962 (trimmed for quality and cloning vector)
CT

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
8.1751
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0188O10
Clone
Clone name
hba-188o10
LE_HBa0188O10
C02HBa0188O10
P188O10
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found