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Clone Read LE_HBa0188G07_SP6_113572

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0188G07_SP6_113572
Primer
SP6
ID from Seq. Facility
LE_HBa_188_G07-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1510 raw
Sequence
>LE_HBa0188G07_SP6_113572 (raw untrimmed)
TTTCTTGCTGTTCAACGCGTCGATTCTCCGTCGTCCTGCAGTTGCAGCGTCTCTGATTTGGATAGTGATTGTGTTCTCTGGTACCCTGCTTCATCCGTTN
CTGTGCTATCGTGCACTCTTATTTCCCCCACCTCCTTCGACTTGCCCGNCTNTAGCGACTACTGGTCGTTCACNTTCTCTGATATCATCGTGTGCCACAC
CCTCTCAGCCACTATTCGTACGCCTGCATATAACCTCCTTATGCTAATGCTACCTACGTTTTACTTCATCTTGCTACGTGCTGGTGCTAGGAGCCTGTGT
ACAGTGTCTTCGTCATTCTATGCTCTTGTATACTAGCGCGCACTACTCACGNCAATGTGCTAAATACTCTCGTNACAATAGCTGTGATGCAACTTCAGGC
TGATGCCGAAGTAGACAGTGATTATGCTGGAAGATGTTATTGGTAGTGTAATACCGTCTTATGATAGCAAGTATACCGATACTTTATTTACTATGCTTTC
AATACACGGTACTGCCATCGGCATCCTTACGGTGTCGCCGGCGTCTCCTCCCGCACATCGTATACANCAGCACACGTGCTCGCAGCAGGCTGTCCTGGTG
CATATTGTCATGATAACTGACGTTCTCCTTAATNTCCNCTGGGATGTNAGTATCTGCATCANCACTTTATGCTCAATGCATGCGCTTCTACGTGCTCGCT
CTTGTTGACGCTNGCCTTTTGCTCTGCAACCACTTACTTCTCTCTGATCACTTGTATACTATCTCTATTGGGCTTCTTTCGTACATGTCTGTACACTTAG
CTAATAGTGTCTTTCTACTCGTATTGCTATAATCTGCAGGTGTCAACAGTTCACCATCCACATGTCAGTCTCGATCCTTCATACGCTATGCTACTCTCAT
GCATAAACATAACATGAATATGATCGTCACATATTGGTTCAACTTCGTGTTATGATTGTTCTTCTACTATCTATATTATACTCTATTTNCTCTACGATCT
TGTGATCTCACTCTGTNCTGCTCTTATTTGCTCGCAGCATAGACTGTTGCACTTTTCATGACTCCGCTCTCGCACCTATCTGCTGTGACATTACACCGCT
GCTATCCACTCTTATGATACTTCTTACTGCTCATCGTGTGATCTTCTCTTTCTACTGTACTCATCTGTACTCGCGCTCTGGTNATCTTTACGGATTGCTA
AATCATGTGTCAGTGTTCTACACGCCAGACTATGTTAACTTGCTTCTTATTCTACACTCTTTACTTCTCTCCTCTCTCTACAAGTTGTCTTATATTCGTC
GAACTCAATACTGCTTTGCTCCTGTCTCTCCACTCTGTAGACCATTCTCAGTCTATGACCATTCTCTGTCGCTGTACTGTTCGTCTCACTGTCTNCTCTG
TGCTCATATGCCATCGGATCTTCTGCCTCGTCGCTGTACGATCCTCTCTTATCGTGTTCACTGACTTGAGCTCCTTGCGTCACGATGATCCTCCTATACA
TCTCTGTGCA
>LE_HBa0188G07_SP6_113572 (trimmed for quality and cloning vector)
GA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.1557
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0188G07
Clone
Clone name
hba-188g7
LE_HBa0188G07
P188G07
Clone type
BAC
Contamination
none
Estimated length
88,514
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found