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Clone Read LE_HBa0181J06_SP6_112946

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0181J06_SP6_112946
Primer
SP6
ID from Seq. Facility
LE_HBa_181_J06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 926 raw
Sequence
>LE_HBa0181J06_SP6_112946 (raw untrimmed)
GACGGAAACCCCCCTCCGCCCCACAGCGAATGCCGTGTCTCCAATGAATCACAATTTAGAACATGGAATGTGGACCATGATTCAAATTTGTGGCAAAGGA
AATGTAAAAGNGTTTAGAAATCGATAATAGAGAAGCATTCCCACGTACATCGCAACCGTATTGAATTATATATTTTATTTTTATTTCTAGTATTCCTCCC
CTCCATTATTTGACTCTATAATGAAAATATAAAATTCATAACAAATACAATTAGACTACATTATAATCTCTTGTGTTCGTTATTTTTTGTTGGTGTTCGA
ACAAAACGTTTTGCATATCAAATCTCTAACTTTGACATATGGGGATAAAAAAGAACAAGTCACAAATCGATCTAAATAGAACGGTGTTGCATTTCAAGTA
GTCTGAAACCTAAAATCAGGACCTGGATTACATAATTCCAAAAATTAAAAAATCGTTTTTGAACCTATAACATCACAATATAACATATTTAATCACTCGT
ATTAAGATTGTTATCTAAGAAGATAATCAATTACGCTGCTATCTGGTGTGCTGAGTTTTTCTATTTTCTTTCTTCTCTTTTATTTTAATATAGTCCTTCT
TCGNCTTTCTTCGTATAATATGTATACTTATCAGCTTACTCGAAAACTTAAATTACTGTTAGTTATATATTCTTAGTAATCATAATAATGTCTGAGAGAG
CTTAATTATATAGNAGATATACTTCATAATGATACATACTTTATGTATATATATAATTGATATAGCCCGTATATTTTTTTTTTTATTATTTATTGTATTT
ACTCTTATTATGTTTATTGTTTTTATGTATGCGCTTTGATTTATATTTTTATTTACTATATTTTTTTATATTCTTTTTTATTGCTTATTATTTTACTTAC
TCTTTATACTATTAATACTACATCAC
>LE_HBa0181J06_SP6_112946 (trimmed for quality and cloning vector)
TTT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
2.3413
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0181J06
Clone
Clone name
hba-181j6
LE_HBa0181J06
P181J06
Clone type
BAC
Contamination
none
Estimated length
89,381
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found