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Clone Read LE_HBa0181D17_SP6_112680

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0181D17_SP6_112680
Primer
SP6
ID from Seq. Facility
LE_HBa_181_D17-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1351 raw
Sequence
>LE_HBa0181D17_SP6_112680 (raw untrimmed)
ATCTCTCTATACNTCATNGCTCTATCGGGCGCGCCTATGCACTCTCTTCTGTGCACACGGATCGTGAACTCGCTCAAATCTATACAGTGAGTAGAGCGTG
CGCTGCCATAGTCTTCTGCGGCTTCAGCGTTAGCACTTAGCGAACAACAGAGGAAGAGGNACAGCGGGATACAGTGAGTAAGTAGAAAATAACGAGACAG
ATCAATACATCTATTGGCGNGCCGAAATACNGATGCTAAGGNGCAAGACTGACTATAACATGCACCTACGTCTACGTACACCTATGCGGAGGNAATACAG
TATACTGATAGATAACATAGATTACTATATCACATATTATAGANTGAGGTGTATAATGATTTATACTGGACGTGCTCTCTCGCTGTTGAGACACTTCCAC
AGTAATCCTATCATACGACTGCTGATCTATGCAGNGGTATCGTCGCGACGAGGACTCTGTGCTATCATAACAGAGTGACTNCGTTACTAGTCTGCGCATA
CTCCATATACTANTTACACTCTATCTATCACAGTCANGACTACGTCTCTCTACACACTATTACTATGTACATAATCANGATCTGATAGAAAATATCATAG
ATCTGTACCANTCATCNACTTGATCACCATGACATGATATCAACAATCATANCTACTAGCTGAGTGTGTATGCTCACGTCCCTACATCGAGANCCGCTCT
GACAAGCTGTACATATTATCGTGTGATAATATGTACGTGTGNCTGTTCGATCTACATACTATCANCTTATCACCGCACATAATCTCATCATCTCACAGAG
ATCGGGGTATTGTACGTTGAATACGAAATCGAGCGAGACAANACTGGCATCATCCNAATACTATGACTNGATCATGATTGTCATATATCGTGACGATCAT
GCTCNGTATTTAGGGAGTGATGATACTGAAGGTATAAGCCGATGATCACTCGTATCTATGCTGATGTCGTGTGTNCCNTAATGAAGGATTGGATCAGCAT
ATCTCATATGAAGCATCGTAATNATAATATACACTACTATGCTGAATANTGCTATCCGAATATANANTATGCATNGCTATATCTTNTNTGATTCTCTGTG
TGATTAGCGTGCAGTATNTACTCTATGNTGATATCTTGCTGTGGTGCAACAGTCTCGAANTGTGGAGCAAGATGGAGTANAGCAATGTATANATAATGAN
GCGTATATCAGACTCATACATAGCTATACGAGCTNCATCTAATCATCGTGACGCGCGCCTGTGACGCTCCNGCGCGAGCGCCTGCTACCTAGACAACGAN
CCTGCGCGCTGTCGCGCGTGCNGTGTTACTCTGACAAGTAGATGCGAGATA
>LE_HBa0181D17_SP6_112680 (trimmed for quality and cloning vector)
A

This is probably not a useful sequence.

Problems:
  • Low complexity
  • High predicted error rate
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0181D17
Clone
Clone name
hba-181d17
LE_HBa0181D17
P181D17
Clone type
BAC
Contamination
none
Estimated length
92,830
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found