Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0131P23_T7_112501

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0131P23_T7_112501
Primer
T7
ID from Seq. Facility
LE_HBa_131_P23-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1441 raw
Sequence
>LE_HBa0131P23_T7_112501 (raw untrimmed)
CGGAGAGACTANANGANCACATGACTCGAAAAGGACANTGTGAAGAACGAGGCAGCNCTGCGACGCTCTGCTCGCTCCTCTCTATACANCGAGTCNGNCG
ACACTACTAGACGACAGCCATAGACGATCGTAGTAGATGATGTATGCGATCCTATNCTNATNACTAGCGCACNCACCAGTAGCAATTATTCACATCTATA
TATAATATGCAGCATGAGAAAGCATANCGTCTGTTCTACAGATCTGATANTGATGTGAGTNACTCANCGCTACNTATGATNGNTACAGATATGCAAACAN
TNCGATANTGTGTGCAACANTATCTGTGAGATATAATGNAGTGAGACTATAGACTATTTGAACATACTAGNCAGAGACTGTGCNCTNGAAGNCACCCNCG
TAGCTACNNGATAGCGCATCGACAACGTAATCCGCCGATAGTANATATGANGCTTGTGNCNGACGAGACTGCTCTCACTGTATGTGCGTCATGCACTATG
ATCTAGCNGTAGTCGCGCGTNGACGTCACGACATGCGCACTGTCNCTCACACCTTATGGCTCATTCTAGCACCCGCGTCTTAGTGCCGATCACGCGCATG
CGTATCGTGTCTGATCGTGCGAANCAGGTCGTACTGCNCCAGTCGGGTGGGAGTCTGAGACGTCGCATCACTATGTGCAGTCACGCGCGTGTCGAGTACG
AATCTGACGCGTNGCTATCGTCTACGAATGTGACGCGGGANTCGCAGTGATACGCGTATCAGTAATGGCGTATATANGAACTCATGCTCTGAACGTAACT
TATCGCACACTCAATATGATAAATAATCTACACACAGCAATAGTATGCGCNACGCTCGCCACGTCGACGTATATTCCCGCANCGTCATCTCGGTGTGGNA
NCNANGTCTGCATACATTGCTCGCCCTACTGCGTATCTNCACCAACGACTACACTCTANCACATGCATCATCGCATACATGACACATTGANCACTACTGA
CACACTACGCACCTCTTAGCTTCGCTCTGNCGCACAACCTCTNGCAACTCAACCTNACTCACTATATGTACATGACGATACTGTCCACATACGCACGTNG
ACTGACTCACGTNGTATACATACACTCTCAACTCCNCCGTCTACGTCTANCTCATGTACACTGATCTNCGCACGCGCTGACNACACAGTCTTTATGCTCA
CGATTCATCCNCTCTNCACGCGCTGNGNTCTCGACTGTNCATGTGCTCCCTGCACCTGGCTGCACTCNATCGCTCTANANCGATACACTGACTGCGCTNA
CGCTGNCTCTNCGTCCTCCTACTGNCGTCTTCTCACGTNCGCANCTCAACGACCCGATCGTCTNCNCTCGCAAATCNCCTATCGTTNTGATGCGCTTGAC
GACNGATTCTAGTAAACCTATCAGTCTGTNCNTATGCACAG
>LE_HBa0131P23_T7_112501 (trimmed for quality and cloning vector)
CTA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
3.6274
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0131P23
Clone
Clone name
hba-131p23
LE_HBa0131P23
C12HBa0131P23
P131P23
Clone type
BAC
Contamination
none
Estimated length
118,976
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found