Clone Read LE_HBa0131N16_SP6_112390

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0131N16_SP6_112390
Primer
SP6
ID from Seq. Facility
LE_HBa_131_N16-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
45 trimmed for vector and quality, 699 raw
Sequence
>LE_HBa0131N16_SP6_112390 (raw untrimmed)
CCGGATTTATTCCTATTTGCAATGCTTGATCACTAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCCATTAAAGGGCCCAAGAGCGAACG
ACACGNAGNGAGNACATTCTTAAAGGGGCNACGCGCGCCAAGGGGAGGCNNGCAGGAAAGNAANNANNAAAAANGNGAAAACAAAAGCAAGAAGTTCAAA
AAGAAACCCAANAACAGCAAAACCCAAAACGCGAGGGAAAGAAGAGGCCANGGAAAAAAAGAAGGCGGGAGGAACAAAAANAAAGAGAANGAAGACGCCA
NGGNAAGAAAGAAGGCAAGAAGAAACGACAGAAGGAGAACAAGGGGAACGGGCGGCACGAACCGACACGNAGACAGAGGGGAACGGGNGACACGAACCGA
CACGAAGAACAAGGGGAACGGGCGACACGAACCGAAACGAAGAACAAGGGGGGGGGGGGGCACGAACCGACACGAAGAAAGAAGGGAGCGGGCGGCACGA
ACCGACACGAAGACACAGGGAAACGGGGGACACGAACCGACACGAAGACCAAGGGGAGCGGGGGACACGAACCGACACCCAGACAAAAGGGAACGGGGGA
CACGAACCGACACGGAGAGGAAGGAGAACGGGAGGCACGAACCGAACACGGAAACCAAGGGGAACGGGGCCGCAAACCGAAACGAACAACAAGGGGACG
>LE_HBa0131N16_SP6_112390 (trimmed for quality and cloning vector)
TCACTAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATAT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.77952
Expected error %
0.5425
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0131N16
Clone
Clone name
hba-131n16
LE_HBa0131N16
P131N16
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found