Clone Read LE_HBa0131K01_SP6_112216

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0131K01_SP6_112216
Primer
SP6
ID from Seq. Facility
LE_HBa_131_K01-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
8 trimmed for vector and quality, 918 raw
Sequence
>LE_HBa0131K01_SP6_112216 (raw untrimmed)
CCGCCGCTTTTCCCCAGAATAGAGTGAGGTTCCGGATCCACAGTTTGAATATGGACATACGAATATATACTGTCCCCTTTTAAGGCTTGTGTTTTCTTCT
ATGGGTTTCATTTTTCCCTTTAAGAGGAAAAAGAAAATGGAGGGGGGGACCCTATATTTTGGATTTTGTATGATCAATTTTTTTCGGAAAATTTATTAAT
TTTGGTGTTTTAATTTTCAAATTTATTTTATTTAAACTGTTAAGTTTTATTATTGAATAAGTTT
AAAATATAATATGATTATATTCTTAAAATTTTAATT
TCAAATAAATTATTTATGCTTTTTTTTTTTTTTGTTTGATTTTTACTATGAACCAATTTGCATTTTTAGTCTGTTTTTCTTCAGATACTAATATGCTTTA
ATCTGTTTCTGTGTCTATTTTTTTGGTAAGAAATTTATAATTTGAAGAATTAGATAGATATATTTATAATTTGAAGAATTAGATCAACAGGTTGAAGGGA
ATAATTTAAGTCTATTCCGATTTTTACTTCAGGTATCTCAGCTTTTTATGTTCTATTTACTTCTTGAATAGAAAACTCCTTCCCCTGCATTTTTTTCTTT
TTTTACTGTAATTTTGTTCTTTTTTCTTTTAATTTTGTGAGCTTGTTTAATGTCCTTTGGTTCCTCTTCACACTTCCACCTTCCTCACGTCTTCTCCTTT
TTAAACCCACCATACTAGTTTTCTACCCTCACTGTATATTCTTCCTTTTAATGACTCTCTTCTTTTCTCCTTATTTCATTCTATTTTTCTCCTATCACAT
TCAATCTCCCCTTTCGTTTCGTGATTTATCTATTTCTTCACCGTCTAATCCACATCACCATAACCTCTTCTCCGTTTTCTCTCGGTTACTTCTCTTCTCT
CCGTCCTTTGCAATGTGT
>LE_HBa0131K01_SP6_112216 (trimmed for quality and cloning vector)
AAAATATA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.3442
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0131K01
Clone
Clone name
hba-131k1
LE_HBa0131K01
C10HBa0131K01
P131K01
Clone type
BAC
Contamination
none
Estimated length
77,943
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found