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Clone Read LE_HBa0131C07_T7_111836

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0131C07_T7_111836
Primer
T7
ID from Seq. Facility
LE_HBa_131_C07-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
642 trimmed for vector and quality, 962 raw
Genbank Accession
DU069294
Sequence
>LE_HBa0131C07_T7_111836 (raw untrimmed)
TAAATTGGGCCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTCGAGCTGATGATCTGTTATTGGTATTGCATAGATGTTTGAGAAAACT
GGTGACTAACATATGACAAACGATGCCTACATGATCCAACTTGATGAACTTACCCTATTTATATGGCATGTTTCATATCTATACCTGTTACCATAAGAAG
AAATACGACACAAAGATCAGTTCCATCATACTTACCTTTACTTATACAGACAATTCTTTAAGGTATATACAGCGTCTTCATCATGAACTATTCAGCCTAT
CAATTCTGTCGATTTGCAATATAACTAGCAATATGATAAAGAGGTGCTGCCTTTGCATAGTCGAAGTAGCTTAGCTCATTCATGGCCTTAGCCATCAGCT
CACCGGCATATTGTCGAGCCTTTTCTAGCCCCATCAACTTAGGATATGTAGCCTTATCTGTTATTAGGTCCTTACCCGCTGTCTTTCCCAGCTCATCTGA
TGACTTGGTAACATCAAGAATATCATCTACCACTTGAAATAACAGTCCAATGCACCTAGCATAGCTCCTCATTCGCTCCACATCAACCTTATTTCCTCCC
CCCATTATTGCCCCACAAACCACAGCAGCCTCCAAAAAGCTTCGCCGTCTTATGGAGGTGAAAGTACTCCAGTTCAGTTAGGCTAACTTGATATCCTTTC
ACTCGCAAGGTCACATTTTGCTCTGCACTGAGTCCTTCTGAAGCAATTGCTGAACCCAATTCCTCATTGGGCTGGAATATCTTTTGGGGTGGCACATGCT
AAGTCTTGTTATCCATATGTTTAAAGTCACATGATTCAATTGTTTCTTTCTAAAATAGTATGTGTTTTTCTATATATTCTAGTTAGTGTCTATGCCTCAC
ACGATTTTGCTGTCTAAGGGGGAGATGTTAGTGATTAGAATATGCCTAGAACTCCCCTACCG
>LE_HBa0131C07_T7_111836 (trimmed for quality and cloning vector)
AGCTTTCGAGCTGATGATCTGTTATTGGTATTGCATAGATGTTTGAGAAAACTGGTGACTAACATATGACAAACGATGCCTACATGATCCAACTTGATGA
ACTTACCCTATTTATATGGCATGTTTCATATCTATACCTGTTACCATAAGAAGAAATACGACACAAAGATCAGTTCCATCATACTTACCTTTACTTATAC
AGACAATTCTTTAAGGTATATACAGCGTCTTCATCATGAACTATTCAGCCTATCAATTCTGTCGATTTGCAATATAACTAGCAATATGATAAAGAGGTGC
TGCCTTTGCATAGTCGAAGTAGCTTAGCTCATTCATGGCCTTAGCCATCAGCTCACCGGCATATTGTCGAGCCTTTTCTAGCCCCATCAACTTAGGATAT
GTAGCCTTATCTGTTATTAGGTCCTTACCCGCTGTCTTTCCCAGCTCATCTGATGACTTGGTAACATCAAGAATATCATCTACCACTTGAAATAACAGTC
CAATGCACCTAGCATAGCTCCTCATTCGCTCCACATCAACCTTATTTCCTCCCCCCATTATTGCCCCACAAACCACAGCAGCCTCCAAAAAGCTTCGCCG
TCTTATGGAGGTGAAAGTACTCCAGTTCAGTTAGGCTAACTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.973632
Expected error %
0.9189
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g20160.1 Score 150 E Value 9e-38 Identity 65.50% Align. Length 378bp (58.88%) Frame 2
68416.m02556 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative similar to gi:2578821; similar to geranyl geranyl pyrophosphate synthase GB:BAA23157 [Arabidopsis thaliana]
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g18620.1 Score 148 E Value 5e-37 Identity 65.80% Align. Length 384bp (59.81%) Frame 2
68415.m02168 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative similar to gi:413730 to geranylgeranyl pyrophosphate synthase, chloroplast precursor GB:P34802 from [Arabidopsis thaliana] synonymous with farnesyltranstransferase
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV74397.1| Score 172 E Value 3e-44 Identity 75.70% Align. Length 384bp (59.81%) Frame 2
geranylgeranyl diphosphate synthase [Adonis palaestina]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAA78047.1| Score 171 E Value 6e-44 Identity 76.60% Align. Length 384bp (59.81%) Frame 2
GGPP synthase [Daucus carota]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0131C07
Clone
Clone name
hba-131c7
LE_HBa0131C07
P131C07
Clone type
BAC
Contamination
none
Estimated length
91,484
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found