Clone Read LE_HBa0198F12_SP6_111230

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0198F12_SP6_111230
Primer
SP6
ID from Seq. Facility
LE_HBa_198_F12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
665 trimmed for vector and quality, 814 raw
Sequence
>LE_HBa0198F12_SP6_111230 (raw untrimmed)
GTTTAAATGGACAACCAAGCAATATTTTACAATAATGGTTTGAAAAAAGGAAAGTTTTCATGGACAAATGGCTCCTTAGCAAGCACTAGCCCCATCATTT
CCGCACGTCTTCATGTGTGCCCTTTTTATATTCTTATTATATATGGAGTATCATTGGATTTCAAAGACAATTTAGAGCCCACCCATCCTTGACATATATC
AACACTAAACACTATAGAGCCAAAAAAGCAGTGATGCTGCTTTCAATGCTTGGCTTGCGGGTCATTGCCCACTGTATGACTGAACTGAGGGGACGTTCTG
AAAGAGAAATAAAAGAGGGACAGTAGTGGGCATATGTAGAGAACGAAAGAGAAAAGGGTTGGGCTAAATTTTTGTGTTTTGAAGACAAAAAGTTTAAAGA
ATCTCTTTCTAGTTGCTATGGAACAATTAGAAGATTCTCTAGAACAAATGCGGTGTTCTGCTAAATTTTAATATGTTAGTTGTGCTACTAGGCATATTTA
AAGGGGAGAATTGGTTATAAAACGAACCTGCTACCGTCATGTATATATAATGATAATATGGTTAAGAATTCAAATGTTTCTCTTATTTGTTTTCTTTGGA
TAAGAAGAAAGATCCTATACTATATTGGAGGGGTTATCTGCTTAGCAGAAACTTATGGAAGCTCACGTTGTGTTATTTGACTTATTTCACTGTTACTACC
ATCTTCATGCTCTATTATTAATTTTGTATCAAGTACCAAACCAAATTGCTCCTTGTCTTTTATATTAATTCAACCTTCAAAGTGTTTATATTAGGTCTGA
GATTCCATGAAAAA
>LE_HBa0198F12_SP6_111230 (trimmed for quality and cloning vector)
ATATTTTACAATAATGGTTTGAAAAAAGGAAAGTTTTCATGGACAAATGGCTCCTTAGCAAGCACTAGCCCCATCATTTCCGCACGTCTTCATGTGTGCC
CTTTTTATATTCTTATTATATATGGAGTATCATTGGATTTCAAAGACAATTTAGAGCCCACCCATCCTTGACATATATCAACACTAAACACTATAGAGCC
AAAAAAGCAGTGATGCTGCTTTCAATGCTTGGCTTGCGGGTCATTGCCCACTGTATGACTGAACTGAGGGGACGTTCTGAAAGAGAAATAAAAGAGGGAC
AGTAGTGGGCATATGTAGAGAACGAAAGAGAAAAGGGTTGGGCTAAATTTTTGTGTTTTGAAGACAAAAAGTTTAAAGAATCTCTTTCTAGTTGCTATGG
AACAATTAGAAGATTCTCTAGAACAAATGCGGTGTTCTGCTAAATTTTAATATGTTAGTTGTGCTACTAGGCATATTTAAAGGGGAGAATTGGTTATAAA
ACGAACCTGCTACCGTCATGTATATATAATGATAATATGGTTAAGAATTCAAATGTTTCTCTTATTTGTTTTCTTTGGATAAGAAGAAAGATCCTATACT
ATATTGGAGGGGTTATCTGCTTAGCAGAAACTTATGGAAGCTCACGTTGTGTTATTTGACTTATT

This is probably not a useful sequence.

Problems:
  • Probable foreign DNA contamination
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.958423
Expected error %
0.114249
Sequence Annotations 
Automatic Annotations
Nicotiana tabacum Chloroplast (screening/organelle/nicotiana_tabacum_chloroplast)NCBI BLAST
gi|11465934|ref|NC_001879.1| Score 98 E Value 4e-22 Identity 92.80% Align. Length 68bp (10.23%) Frame 2
Nicotiana tabacum plastid, complete genome
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0198F12
Clone
Clone name
hba-198f12
LE_HBa0198F12
P198F12
Clone type
BAC
Contamination
none
Estimated length
100,418
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found