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Clone Read LE_HBa0197E10_T7_110411

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0197E10_T7_110411
Primer
T7
ID from Seq. Facility
LE_HBa_197_E10-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
633 trimmed for vector and quality, 996 raw
Genbank Accession
DU095912
Sequence
>LE_HBa0197E10_T7_110411 (raw untrimmed)
TTGGCTCGGTCCCGGGGGCTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTACGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTC
TTGGGGCACGTGGTTTCTAAGGATGGAGTGATGGTGGATCCTTCTAAGATTGAGAAAGTGAAGAATTGCGTAAGACCTACTAATGTGTCAGAAATAAGGA
GCTTTGTTGGGTTAGCTAGCTACTACCGGGATTCGTCAAGGGATTCTCTTCTATTGCTTCCCAGTTGACGAACTTGACTAAGCATAATGCTCCATTTGTA
TGGTCGGACGAATGTGAGGAAAGCTTTCAGAAGCTCATGACTTTGTTAACTACCGCACCTATCCTTACCCAGCCAGTAGAGGGTAAGAACTTCATTGTTT
ATTATGATGCATCCTATTTTGGTTTGGGTGTAGTACTAATGCAATAGACTAGTGTGATTGCTTATGCTTCTTTGTTATTAACCGTGCATGAGCGTATCTA
TCCGTCTCACAACTTGAGAATTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTCTTTTTTTTTTTTTCTTTTTTTTTTTTCTTTTTTTT
TTTTCTTTTTTTTTTTTTTGTTTTTTTTTATTTTTTTGTTTTTTTTTTTTTGGTTTTTTTTTTTTTTTTTCCTTTTTTTTTTTTATTTTTTGTTTTTTTT
TTTTTTTTTTTTTTTTCCGTTTTTTTTGTTTTTTATTTTTTTTTTTTTTTTTTTTTATGTTCTTTTTTCTTTTCTTTTTCTTTTGTTTTTTTATTCTTTT
TTTTTTTTCTTTTTTTTTTTTCATTCCTCTATGTCACGTTTAAACCAACTACATCTTAGAATACTTCTCTTCTATACCCACAAAGATCTTCTAAATCTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAATTCCTTAGCAAATACCTCACCTAATCTGTTCCGATCTTCCCCACTACTAGACA
>LE_HBa0197E10_T7_110411 (trimmed for quality and cloning vector)
AGCTTTACGCCAAGTTCTCTAAGTGTGAGTTTTGGCTAGATGCAGTGTCCTTCTTGGGGCACGTGGTTTCTAAGGATGGAGTGATGGTGGATCCTTCTAA
GATTGAGAAAGTGAAGAATTGCGTAAGACCTACTAATGTGTCAGAAATAAGGAGCTTTGTTGGGTTAGCTAGCTACTACCGGGATTCGTCAAGGGATTCT
CTTCTATTGCTTCCCAGTTGACGAACTTGACTAAGCATAATGCTCCATTTGTATGGTCGGACGAATGTGAGGAAAGCTTTCAGAAGCTCATGACTTTGTT
AACTACCGCACCTATCCTTACCCAGCCAGTAGAGGGTAAGAACTTCATTGTTTATTATGATGCATCCTATTTTGGTTTGGGTGTAGTACTAATGCAATAG
ACTAGTGTGATTGCTTATGCTTCTTTGTTATTAACCGTGCATGAGCGTATCTATCCGTCTCACAACTTGAGAATTGTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTATTTTTTTTTCTTTTTTTTTTTTTCTTTTTTTTTTTTCTTTTTTTTTTTTCTTTTTTTTTTTTTTGTTTTTTTTTATTTTTTTGTTTTTTTTT
TTTTGGTTTTTTTTTTTTTTTTTCCTTTTTTTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.878631
Expected error %
3.11582
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 119 E Value 3e-47 Identity 61.90% Align. Length 472bp (74.57%) Frame 1
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 119 E Value 5e-47 Identity 62.90% Align. Length 472bp (74.57%) Frame 1
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0197E10
Clone
Clone name
hba-197e10
LE_HBa0197E10
P197E10
Clone type
BAC
Contamination
none
Estimated length
110,144
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found