Clone Read LE_HBa0194N24_SP6_110102

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0194N24_SP6_110102
Primer
SP6
ID from Seq. Facility
LE_HBa_194_N24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1331 raw
Sequence
>LE_HBa0194N24_SP6_110102 (raw untrimmed)
TGTGTGTGTGCGGACGGTGCGTCGAACNCTGACTCCTCATGCTGTGNTATGAGACACTANTCATCTGGTGGTATATACAGAGAGGGTCCGCCTCTCTCTA
ATGAGTGAGTGAGCAGAACATAGTACTGCTAGATGNTAAACNCAGACGTGATCGAATGATTGATAATGTGTTACAGTTNTCCTTTGCCTATAGCTTAGAG
TGCGCGAACTAANGACAGATCCACNATAGACAANAGTGTATCATTCTACAAGAGGAGAGTCGCNATNNTGACAGCACAATGCCTGAGTGATCACAGCAGC
GCAGATGATCACCACTATGTGCGGCGCAAGGACACCGATCTGCCGTNGGCTCTGAGAACTAACATCAAATCCCTCTCTTGTGAGAAATATAGATCACACG
TATGTAGAGACAGANGTCTNGNGCTATGAGTGCNCTTGAGGTATATGGAGTGGTGTGTACACATCGCTATGCACAGCTGAGTTGGACANCCGACGCATGA
TATCCATCATACACGCGGTGCAGTACGTGGGTANCATTCCATAGGTACANGAGCATGTGATCGGAGCTAATCACNAGGGTCGTGCNATACGAGGCAGCGA
CTAAGATCGTAGCCGAGACCATAATTNCTGTAGGNAGATGAGATGCGACTACTAGAAGCAACGTGCAACTGGTCGATCGCCCGCACNGAGAGNTACTCTG
CNCAATGTGCGATGGNTNGGCGTGCAGTGAGAGGGAGTGGGTATGTGATTTGTTTTGTCGTTTCTACGTCGACGCGCCGAATGCAGGCAGTGAGTATGTC
CANTCTTCTTATCTGAGAGAGAAACGCGGNGANTGGTCGCTGCTGTATATTACGTGTATTCTATATACGNATGTTACTCGATTCATTGACGGTGCGATGT
GGTAGTGATCGTAGTTGTAGTGACAGGCTGTTGGNTNGAGTCATAGCGATTATACTACTTCTCGCTGGCGAGGCTGCCCACTAGNGNGTTCTCGCAGGGA
ACTTACGAGGCNAATCATGGTGGTTCCNACCTGATCATCGATNTGCGTACAGATGCGTATGATGCTATATTNATAACGAGCAACTCTATCNGCAGACATG
CTGCTATAANTGCAATTACGCACGACTCGGTGATAATGACTACGGCATACGACCGAAGTACGATGAACAGTGTAACAGACTCTGACGTGATATGCGACAC
ACTGGTATGACGGTGTACGTCAGGACGAATCACANACACGATAATGAGAAAGAGTGAGAGATAANCACGGAGACTCTGCGNGAAAACTANATCGGACAGA
AGACGTGAGACTAGATTGATATTACTAATAT
>LE_HBa0194N24_SP6_110102 (trimmed for quality and cloning vector)
TC

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
25.31
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0194N24
Clone
Clone name
hba-194n24
LE_HBa0194N24
C02HBa0194N24
P194N24
Clone type
BAC
Contamination
none
Estimated length
115,443
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found