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Clone Read LE_HBa0194L19_T7_109997

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0194L19_T7_109997
Primer
T7
ID from Seq. Facility
LE_HBa_194_L19-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
494 trimmed for vector and quality, 838 raw
Genbank Accession
DU094866
Sequence
>LE_HBa0194L19_T7_109997 (raw untrimmed)
TCGGGTCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTATTTAATACTCTATCTGAGTCCCTTTATGTGACATTTCTTTTTCAGGACTCA
AACTATGTAACCTTTGATAATGTGAACTTTGCAACTTAGTACTATTCATGTAGTTTTTGAAAAACATTGGGTTGATCTATAATCCAATTAGCTTCAAAGA
TCAGCCAACTTGGCTCACAGGAAATGAAAAATATCAAATGAAATAGGGATATAACAGAAATGAAATAGCATCCTAACAGTACCTGCCCAGCTGCCTGCAC
TTGGGACATTTCTTTCCACATTTATCAGCAGCAGATCGCAAACACTTCTTACAAAAACTACAGATATGATTTTTACCAAATTTGTCAGAGTCAGTTCCTG
AAAATGCCTATATGTATTGATTTATGAACATAAGTTGATGACGATGCCATTGAGATCGTACCTGTGATCACAAGGAGTGGTACCCGGTTCAAAACAGATC
TCCAAACAAATCTGCAAATTCCAAAGAAACCTAGTTTATACTTATAATAAAATCCGAAAATAGAAAAAAAGATATCCCTCAATTGATAAACAGAGTAGGG
GCACCAAGGTTCAAAGAACGGAACTTACATCCTTTACGGTCGCGCTAAAGTCTTCTTCTTTAAATTCAAATCTATTGGATGGGGAACAGTCTTGTTGATT
AAATAAATATATTGAAAAACCTCCCGGGTTTCTCTCTTGATGTTTTGAGTATCCTTATTTTGCTCTATTCTACTCCATTGGTGTATTTTGGGATTTGATT
TCTTTTTTTTTTTATATAATCCTTACTTTGCGGTTCTG
>LE_HBa0194L19_T7_109997 (trimmed for quality and cloning vector)
AGCTTATTTAATACTCTATCTGAGTCCCTTTATGTGACATTTCTTTTTCAGGACTCAAACTATGTAACCTTTGATAATGTGAACTTTGCAACTTAGTACT
ATTCATGTAGTTTTTGAAAAACATTGGGTTGATCTATAATCCAATTAGCTTCAAAGATCAGCCAACTTGGCTCACAGGAAATGAAAAATATCAAATGAAA
TAGGGATATAACAGAAATGAAATAGCATCCTAACAGTACCTGCCCAGCTGCCTGCACTTGGGACATTTCTTTCCACATTTATCAGCAGCAGATCGCAAAC
ACTTCTTACAAAAACTACAGATATGATTTTTACCAAATTTGTCAGAGTCAGTTCCTGAAAATGCCTATATGTATTGATTTATGAACATAAGTTGATGACG
ATGCCATTGAGATCGTACCTGTGATCACAAGGAGTGGTACCCGGTTCAAAACAGATCTCCAAACAAATCTGCAAATTCCAAAGAAACCTAGTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.956207
Expected error %
1.90803
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g27330.1 Score 62 E Value 4e-15 Identity 96.40% Align. Length 235bp (47.57%) Frame 3
68416.m03418 zinc finger (C3HC4-type RING finger) family protein contains Pfam profiles: PF00097 zinc finger, C3HC4 type (RING finger), PF01697 Domain of unknown function
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_189369.1| Score 62 E Value 2e-13 Identity 96.40% Align. Length 235bp (47.57%) Frame 3
zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB02787.1| Score 62 E Value 2e-13 Identity 96.40% Align. Length 235bp (47.57%) Frame 3
unnamed protein product [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0194L19
Clone
Clone name
hba-194l19
LE_HBa0194L19
C02HBa0194L19
P194L19
Clone type
BAC
Contamination
none
Estimated length
111,082
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found