Clone Read LE_HBa0050K01_SP6_10848

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0050K01_SP6_10848
Primer
SP6
ID from Seq. Facility
LE_HBa_050_K01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1644 raw
Sequence
>LE_HBa0050K01_SP6_10848 (raw untrimmed)
GATACACCCTCCCTCTCTCCTTCTCTCGTGCTTAGCTCNGGNCAGCNNCCNCACNCNNNNNCACGNCCTCAACNACACGAACTAAGCCACATGACAACAA
ATGCTATCGACCACACAATAGGGACGCACACGCTATGTNTNTATGGACTCGCGGAATGGNTNACACACTCGCATACATAGGGATATTCTCTATTATCCCA
GGTNCTAGACAACTTCTTTTAGTTGTAGTATACTAGTGGACAGTGCTACGCCCCTCGATCGCTCTTCCGCACANGTGTCGGTNTCGTATGGCNATACATT
CTATNCGTCCTTCACGNTCTCANACTAGTCGAGTATGAACATGTGTGTGATCCTCTGCCTCTGCCTAGTAGATTATGGGTGGAGAGATGGCGACGTAGAC
TGTATCAGCGTACTCATGCTCTCACTCGGGGGGAGGTGCTNACGANCACATGTGTTNTATATACCGTCATCACAGACAACATGAATATCCNAGCCTCACT
NTCACGNTCACTAGGGTANANGTAGTGTATNGNANCTTNACCAAGGNTNCTATACATGNTGCATGTACTAATAGTAGATGCATAGCAGTCTANATAGTCA
NAGAGTGAAGATGANGTACTCTGAAACGAGGGGTCATCTGCGCAGTCACTCTCACAAGCGACCCATCTGGCGTTGACTGTTATCGTTGCTGAGTAGTATA
CCTCCACACGCGGAACTTTGTACTGCTGGANGCACATTCGCAATTCTATCCATCTGTAGATACACATACACACGTAGACGTAGACGGATGTACGCGTACT
CTCGTACACACTCGTGATTATTCTTCTCNTTACTCACTAGGAGAGACGCGCGCTGTCTACACTTAGCTTTTTCTCATAATGAACAGTCGCTATCGTCTCT
ACCCCACACCTNGCAATCCCACTGCACATCATATCTCCTAATCTGCGCTCTACTAGCTCAATCATTTGGCTCATATACCGTACACGATGCTGGAATGCTC
TTTGNGATCACTCTCGCGCACCTTCATACTAGCTCATTTCAACACTGTACACAANCTATACTCTTACTGTTANCATTTGNCGCAATTCAATCTGAGATCT
CGAGTATTGTCAGTCACTGAGTCCTCTATCTCTACTACATAACATAGCGGNTGAAACTATCGGCCGTATATCTCGACTCGACTGCGTACCACCGTGAGCT
GAGACTCACTCAACAGACTGCTACCNCAATGCGGGCTCGCACCCCTCGACGCAACCCAGACCAATCCTATTCGCTCACCTAAANACTCTCGCTCCTTCCT
CTACCATTCTCTACTCCTCTCTGCTCCTCGTCGATTCTATTTGTCCTGTTTTATTCTATTTTTTTCTTCTGCTCTTACTCTACTACCTTACTTTTATGTG
ACCGTGCTCCCCTGCCCTAGCCTTCGCGACTCACCACCCACTCCACACTACCCTCTCACGACGCCTCCTCCACCCTTCATCCCCCACCCCGACCTCCTCA
TCCACCCGCCCACTCTACTTCGCCTCATCTCCATCGCTCTCTGCCTAGGCGCATCCTCTCTCTGATACTGCACCTACCTGTTGCGCCTCTCTGATTCCGC
CCTCTCCGTCTNCACTTCTCGTTTACCGCTCCGTTCACTCCTAC
>LE_HBa0050K01_SP6_10848 (trimmed for quality and cloning vector)
GA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.31311
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0050K01
Clone
Clone name
hba-50k1
LE_HBa0050K01
C02HBa0050K01
P050K01
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found