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Clone Read LE_HBa0190K17_T7_107649

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0190K17_T7_107649
Primer
T7
ID from Seq. Facility
LE_HBa_190_K17-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
370 trimmed for vector and quality, 865 raw
Sequence
>LE_HBa0190K17_T7_107649 (raw untrimmed)
CTTCTGTTTTTCTCTGGTCTCGGGGGATCCCTCTAGAGTCGACTGCATGCATGCAAGCTTATGTACAACCTTGGCAATTCCTTTTGTCCTATGAAGACTT
TCAAGACACCTAGTTTGGATACTTTTAACTCAAGTTGAGTTTTTCACAAATCTTTAGTCAATAAGTCTTCCAGTTGATCATGTATTTTCCTGATAAAGTG
ACAATCTATTTCGATATGTTTAGTTCTCTCATGAAATACTAGATCTGCAGCTATTTGAATAGTCGCTTTGCTATCATAGTAGATTGATATCAGTCCTTCA
ATCTAATTTCCAATTCCTTATGAGGTTTGTGACCCAGACTACCTCAGTTGTTAAGCCTGCTAAAGTTCGATACTCAACTTCTGTTGAACTTTTGCTTAGA
TTTCCAGGCAATGACAGATTCACCAAGTTTGAGGATGTGACATGTTACAGTCTGGCCCAATTAGTATCACAATACCATGTTATGTTTCATGTCCTTCTCT
GATGACATTATTAATCCCAGCCCTGATTGATTCTGTATATTCTATAGAACTCTCAATGCTGCATAATAATGTTATACTATAATGTCTCTGCAAAAATCTT
TTTTATATGTTTTATCTTGTGTAGGCAATATCAAAATGGGTACGTTAAGGTATTTTCCCCGATAAACTTTTGATTTGTATTAATAAAATGAAATTAAATA
ATAACTAATAATTAGATGCAAGTTAATAGATTTAATAATCATTCTAATTTGTCTTATAAGGCTTGCGTTCTTAAAAACACTTAACTGAATTCTCTAGCTC
AGTTATATAATTCAATCATAAATATAAAAGATATTGCATTAAAATTTTTATTTGCTCTTTTGTTT
>LE_HBa0190K17_T7_107649 (trimmed for quality and cloning vector)
TGAAGACTTTCAAGACACCTAGTTTGGATACTTTTAACTCAAGTTGAGTTTTTCACAAATCTTTAGTCAATAAGTCTTCCAGTTGATCATGTATTTTCCT
GATAAAGTGACAATCTATTTCGATATGTTTAGTTCTCTCATGAAATACTAGATCTGCAGCTATTTGAATAGTCGCTTTGCTATCATAGTAGATTGATATC
AGTCCTTCAATCTAATTTCCAATTCCTTATGAGGTTTGTGACCCAGACTACCTCAGTTGTTAAGCCTGCTAAAGTTCGATACTCAACTTCTGTTGAACTT
TTGCTTAGATTTCCAGGCAATGACAGATTCACCAAGTTTGAGGATGTGACATGTTACAGTCTGGCCCAAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.94683
Expected error %
1.21818
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 46 E Value 9e-11 Identity 57.60% Align. Length 241bp (65.14%) Frame 3
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89728.1| Score 61 E Value 1e-14 Identity 77.10% Align. Length 268bp (72.43%) Frame 3
putative retroelement pol polyprotein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39941.1| Score 52 E Value 7e-13 Identity 58.50% Align. Length 262bp (70.81%) Frame 3
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0190K17
Clone
Clone name
hba-190k17
LE_HBa0190K17
P190K17
Clone type
BAC
Contamination
none
Estimated length
139,964
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found