Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0190A14_SP6_107162

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0190A14_SP6_107162
Primer
SP6
ID from Seq. Facility
LE_HBa_190_A14-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1338 raw
Sequence
>LE_HBa0190A14_SP6_107162 (raw untrimmed)
CAACCCCGGCGCGTTCCCCTCCCCTTAGGAGAGTGGAAGTCTCTAGGTCTTGAGCTTGGCATGTCGGCCAATGACAAATTATCATGGAAGTTGTGGCGAG
TTCTATCAANATCGTCTCCCTCTTATTTAGTAGCGCGATACAGTGGTCACTAGCGTTAGTAAGTATTATGGTACAGGATTATCCTATATTGGAGTGAAGA
TGCAGACTACGTATGGACAGGAGTGATGTATTGCACAGCAAGTATAGTAAGAATTTAATAGTAACTAATCTGTGCAATCTGTCCAAATGTCACAAGCACC
ACTCGCGCATTCTCACTAAAAGAGAAAGTCGAGCAGGCTGATTTTGCGATATTGGAGCAGCCGATACTTTCACTGTAGTCGTGTGATATGATNTATAGGT
CATCAATGTACTACTATACACCTGCATTGTATTGTATATCCTGTGCCCANTACATGTCTTTTTGTCTTTACCCTTGCTGTACTCTAGCGGACTAAGGTTG
GCTGTAGTGAGTATGGGTGATCGTGAAAACATGATCTACGTGCAGTCATGGGCTCTATTGTAGCTTTACGTCTATTTAAGTGTCGCAGGGAGACATCTCT
TCACTACTAGTGCGATCTAATTGTATCGCTTGTGAACACTCTTATGCATATGTTGCTGAGTTGCACTTANCTTTCCTATGTTCAGGTCCTTGACTGATCT
GTGTGTGAGACAAGTCGGATTCGGTCTTANGTAGTGCATCTTCCGCACGCCTGCCCATACCGTTGGTGTGATTATAATGCTGGGAATATGATTATGAATT
AATATAGCGAAAGTGTATGCAGTGTGTTTGGAGGATGCTCTATCTTATCTCTGANGAGGCTTGTATATGGTCTCTCACTATAATTTCTTACTGTATATAT
CACCTATGTTTGAATGTTCTTGATCGCACTGCTTTATCTAGAACGCTTCGCATTCTAGGCTGCATGCCATGCTGATACTGTTTGCTGACCACGTATCATC
TTACAAGATCTGTCGTCGTGTACACACAACTGCTCACTGAATGTGAAGTCCTGTGAGTGATGCAGCAAGCACAGTAACNTGACGCGCGATACTTAGTTGG
ACCCTTCACTGTTTGAATCCTTATTAACTGATTGTACAGGTATATCTACCAACAGCGTCAGACGTCTGCACGACGACACAGATATGATGTGAAAGTGCAA
TAGGCGTGGCGAAAGATCGAGTTTGATGAAACGGCAACTACCTCTATCTCCATCTAACTACACGGACTCATGTACAACTGTTTATAGCTGCTATGGGTAT
GAACTGACTGACATACACTTGGTTGCCTAATTTNTACC
>LE_HBa0190A14_SP6_107162 (trimmed for quality and cloning vector)
C

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0190A14
Clone
Clone name
hba-190a14
LE_HBa0190A14
P190A14
Clone type
BAC
Contamination
none
Estimated length
109,187
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found