Clone Read LE_HBa0050H06_T7_10715

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0050H06_T7_10715
Primer
T7
ID from Seq. Facility
LE_HBa_050_H06-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
625 trimmed for vector and quality, 867 raw
Sequence
>LE_HBa0050H06_T7_10715 (raw untrimmed)
TTGGGGATCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGCTCATTGTTTGCTGAGTATTTTTTCGTCAGTGCTTCCAAAGATGGAGAAG
TAGATCAATGATGCTGGCTTCTGACGTACTCGGAAGTTCTGATCCATCTGCAACTCCCACCACGATTCTCCTTCTCTGATTGTATGTGACTGCACCGCAA
GGAATATGTGCTGGAATGTCGCGATGCAAGCGTATGACATGATGTGTGTGTTGAGAATCTGTTCCTTATTTTCGCGGGATGGCCTAATATGCATGCCTCT
GGATATGAAATGCAAAAACCTCTAAGACATATTAACCATTGAATAAAAGAGACTTCAACTTTTCTCCAATAATGTATGCCATCAATTTGTTACGTGACAT
AAATGAATGTTAAGAAATTTTCTTGCTACGACATGTTTATAATTAGAATAATCCTTTTACAGAAGGTAGACCAGAAATGTCTAGGTCTCATAAGCTACAA
GAACTCTGGAAGGTACGAATCACCGATAGATCACTCTCCTGAGTTAAATCAGGAGCGTGATGCATTGCCGCGGCTAGAGAACCTAATTATACCCTGCAAA
AGGTATAAAGGCTCGCTAGGGTGATCTCTGAACTGATGGTCACAAAAAGTACTTAACACATACTTGACTAGTATTTCTGGTACTAGTTACATACAAGAAA
ATTTTATTCGACTCACTATGATGTGTCTCCCAAACGAACTAAAATAGCTTAAACGAATGTGGAACAATTTCCCCGCAAAATCCGGAAACTCATAACGAAA
CATTGTAACTGTACGAGGGGCGCCTTCCATCATAACTAAAACTACACCCACCCAACCCAGGCGGCCC
>LE_HBa0050H06_T7_10715 (trimmed for quality and cloning vector)
AGCTTGCTCATTGTTTGCTGAGTATTTTTTCGTCAGTGCTTCCAAAGATGGAGAAGTAGATCAATGATGCTGGCTTCTGACGTACTCGGAAGTTCTGATC
CATCTGCAACTCCCACCACGATTCTCCTTCTCTGATTGTATGTGACTGCACCGCAAGGAATATGTGCTGGAATGTCGCGATGCAAGCGTATGACATGATG
TGTGTGTTGAGAATCTGTTCCTTATTTTCGCGGGATGGCCTAATATGCATGCCTCTGGATATGAAATGCAAAAACCTCTAAGACATATTAACCATTGAAT
AAAAGAGACTTCAACTTTTCTCCAATAATGTATGCCATCAATTTGTTACGTGACATAAATGAATGTTAAGAAATTTTCTTGCTACGACATGTTTATAATT
AGAATAATCCTTTTACAGAAGGTAGACCAGAAATGTCTAGGTCTCATAAGCTACAAGAACTCTGGAAGGTACGAATCACCGATAGATCACTCTCCTGAGT
TAAATCAGGAGCGTGATGCATTGCCGCGGCTAGAGAACCTAATTATACCCTGCAAAAGGTATAAAGGCTCGCTAGGGTGATCTCTGAACTGATGGTCACA
AAAAGTACTTAACACATACTTGACT

This is probably not a useful sequence.

Problems:
  • High predicted error rate
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.974133
Expected error %
6.44368
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0050H06
Clone
Clone name
hba-50h6
LE_HBa0050H06
P050H06
Clone type
BAC
Contamination
none
Estimated length
71,612
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found