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Clone Read LE_HBa0173K06_SP6_105322

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0173K06_SP6_105322
Primer
SP6
ID from Seq. Facility
LE_HBa_173_K06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
644 trimmed for vector and quality, 847 raw
Sequence
>LE_HBa0173K06_SP6_105322 (raw untrimmed)
CTGGGTACCGGGGGTTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTCCCCATAACTCTTTTTAAAATCTATGGCATAGAGGAGTCCTACGACCTTGT
AGGACTCTCCTACTTATTTTGCAAGGTGCAGCTCCTTTTAATAGATTATAGCTTGTGCCTGATCTCCCCATCTTGTTTAGGTAAAATCATGAATTCAAAC
TACAATAGGATGATCAAATTTAACCATCTTTTCATTTGAAAATTTGTGTGTATCTACTTCCATAAATTAACTGGTCAAAGTGAACCAAATAGATGTATGT
CAGGTGTAAATTGTCTTCTTCATGTTTATGACGTTTTACTGTTTTTGGTATATTAAGGATCAAATTTCAGGATCACAGAGATTATCTTCTTCATTTTTTT
ATAAAGAATAATAATCCATTTTAGTTTCTTTGTGAATGAAATACTTATTCTGTGCTGTTCATGTAATTTTTTTCAGGCTCTATTTATGCCATATGATCAC
AAGAACACGACTCCGGAAGGATTACCTTCTCAGAGGATGAGATTAATGCTTGAAAAGTTGAATCGTTTTCAGCTGAATGATCGTTGCTTGGTTGGATCTG
GCGGAGGCTCTGTCGGGTTGGTATCACTTACTCATCACTTTTATGTTTAGCTACTTGGCTTTGAGAAGGGAACAAAAGTGGATTCCTGTTAGATAAATGC
AATATGCTTTGTGTTTTATTCTAGCAGTGAATGTATTTTCTATTACTGCCTGTTTAAGCCCCTTTATTGGAAAAAAAAAAAATTGAATAAATTATCATCC
AATTGTTTGGCATGAAAAAAATTCCAATTTTTGATGTCTTTCCTTTG
>LE_HBa0173K06_SP6_105322 (trimmed for quality and cloning vector)
AGCTTTCCCCATAACTCTTTTTAAAATCTATGGCATAGAGGAGTCCTACGACCTTGTAGGACTCTCCTACTTATTTTGCAAGGTGCAGCTCCTTTTAATA
GATTATAGCTTGTGCCTGATCTCCCCATCTTGTTTAGGTAAAATCATGAATTCAAACTACAATAGGATGATCAAATTTAACCATCTTTTCATTTGAAAAT
TTGTGTGTATCTACTTCCATAAATTAACTGGTCAAAGTGAACCAAATAGATGTATGTCAGGTGTAAATTGTCTTCTTCATGTTTATGACGTTTTACTGTT
TTTGGTATATTAAGGATCAAATTTCAGGATCACAGAGATTATCTTCTTCATTTTTTTATAAAGAATAATAATCCATTTTAGTTTCTTTGTGAATGAAATA
CTTATTCTGTGCTGTTCATGTAATTTTTTTCAGGCTCTATTTATGCCATATGATCACAAGAACACGACTCCGGAAGGATTACCTTCTCAGAGGATGAGAT
TAATGCTTGAAAAGTTGAATCGTTTTCAGCTGAATGATCGTTGCTTGGTTGGATCTGGCGGAGGCTCTGTCGGGTTGGTATCACTTACTCATCACTTTTA
TGTTTAGCTACTTGGCTTTGAGAAGGGAACAAAAGTGGATTCCT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.955851
Expected error %
0.763266
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g42320.1 Score 69 E Value 2e-12 Identity 25.40% Align. Length 113bp (17.55%) Frame 3
68418.m05150 zinc carboxypeptidase family protein contains Pfam domain, PF00246: Zinc carboxypeptidase
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_199047.1| Score 69 E Value 1e-10 Identity 25.40% Align. Length 113bp (17.55%) Frame 3
zinc carboxypeptidase family protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0173K06
Clone
Clone name
hba-173k6
LE_HBa0173K06
P173K06
Clone type
BAC
Contamination
none
Estimated length
94,949
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found