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Clone Read LE_HBa0172I12_T7_104471

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0172I12_T7_104471
Primer
T7
ID from Seq. Facility
LE_HBa_172_I12-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
31 trimmed for vector and quality, 841 raw
Sequence
>LE_HBa0172I12_T7_104471 (raw untrimmed)
TATAACTCGGTCCCGGGGGGTCCTCTANGAGTCGACTAGCAGGCTAGCAAGCTTGTTTTTTCATTAGATNGATTTCGTAGAATACCAACACCAGCTAAAT
TCCCAGATTCTTATTCGTTGTGGTTTGGATTTGGAAAAATGATATGGGGCTGTCAGTTCCTTCTCTCCGTGCGAAGAAAGAATATTAGATCAACTCATGT
GGAGGGCATACTTCACTCTTTATTCTGGTGCGTATTGGTGGGGTACTTCCTACATTAACACCTCTTTAGGTTCTTTATTAACAGAATATCTGGAGGTTTT
GTTGTGAAGTCTTCAAACCCAAACCTCTCTGATGNAATGCACATTATCAATATCTGGCAGTGATGAAACTGATTGGTTTGGAGGTATATCATTGATATTC
TATAACCCACATGAAATATTTCCTCCGGAGTTGCTTGATGTTAGAACTTTAGTCTAAAAAAATTATTAATAATAACACTACACATTAATATTGTTATTAA
AATAAAAATAAAATAACAATTTTTTATAATACTCGAAATATTCTAAATAATTGCTCTACACATGTCTGAATCCCGATGTGCTTCGAGAGAAGGTTGTGGG
GCCAAGATAAGATTTTGTGAATATACACACTTGCGCAAAGTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTA
TTTATTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTCTCTCTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTATTTTTATTTTTTTAT
TTTTTTTTTTTTATTTTTTTATCCGNCCCATTATAATTTAT
>LE_HBa0172I12_T7_104471 (trimmed for quality and cloning vector)
ACCAACACCAGCTAAATTCCCAGATTCTTAT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.146917
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0172I12
Clone
Clone name
hba-172i12
LE_HBa0172I12
P172I12
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found