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Clone Read LE_HBa0172F14_T7_104331

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0172F14_T7_104331
Primer
T7
ID from Seq. Facility
LE_HBa_172_F14-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
0 trimmed for vector and quality, 982 raw
Sequence
>LE_HBa0172F14_T7_104331 (raw untrimmed)
AGCTAACTGGGCCCGGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGAGTATTCTATATTGTCACCCCTTTAGCTCGGCGTAAGCTTGGTCAT
AGCTGTTTCCTGTCCTTTTATTGTCATCCGCTCACTATTCCCCACAACACACTAGCCGAAGACTTAAAGTGTAAAGCCAGGGGCGCCTAATGAGTGAGCT
AACTCACGTTAATTGCGTTGCGCTCACTGCCCACTTTCCAGTCGGGAAACCTGTCATGTCATCTGCAATAATGAAAAGGCCAACACGAACCCCTTGCGGA
CCCCCAACCTGTAAACCAATTCAGTTATTACACAGCACAGCAATTGATTACTCCCTTCTCCACATCTACCTTAGACACTTACACATAGGAACTCACCACG
CCATGTTAAGGCTCCAAGAACTGCCCTATATAAAATACACATCACCAAGTCCCTCATAACCAATCATGATCACATCATTACGCCTCACACCCACATTGTA
ACTCTCCTGCACAAAAAAAAAAAGGCCGAAACGTCTCCAGAATACAAAAATCTGTACTTCATCTTTATTATATGTCCGAGTGAAATAGCCTTTTGCAAAA
AAGCTGATCTTGAAATCAACCTTTACAACATATGCGACATACTATATCCATGGAACGAACTCAAATTAAAACTTCTTCTTCATTTTATACATTAGGGAAT
AATTTCTGGTATCTACGAAACGATATCCCATGTAATGAAACTCTATATCATAGTCTGTCCTAAATAGGACCCCAAATACATTTAGTATGTGTCCAATCAT
CCCTTCTCTTCCATGTCTAGCCGTTTCATATTTAACTTGACGAACCTTTTTCTCATCTTCACCTACCTATTACTCTTATTTTCCCACCTCCTCCTTCACT
CCNATATAATAGGTATATATGCAGATTAACTGCATCTAAATAGTCCTATGGATTTGTTCTATTAGCTCCTCTTTGTCTTCTA
>LE_HBa0172F14_T7_104331 (trimmed for quality and cloning vector)

This is probably not a useful sequence.

Problems:
  • Low complexity
  • High predicted error rate
  • Probable foreign DNA contamination
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, no insert found (only flanking vectors)
Quality trim threshold
14.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0172F14
Clone
Clone name
hba-172f14
LE_HBa0172F14
P172F14
Clone type
BAC
Contamination
none
Estimated length
96,309
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found