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Clone Read LE_HBa0162P08_SP6_104030

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0162P08_SP6_104030
Primer
SP6
ID from Seq. Facility
LE_HBa_162_P08-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
538 trimmed for vector and quality, 851 raw
Sequence
>LE_HBa0162P08_SP6_104030 (raw untrimmed)
GATTTCCTAGCGGGTTCTCTTCGCGCAAGACATTTATTAGGACCAACAGGTCACACGACAGGTGCACGATCCCTTTTCCGCGTTCCATAAATGACATGAT
TCAACTGCCAGTGATTTTAGGAGCTTCCTGAGAAGAGTAAGTTTAATCCTGTAAATAGCATGATTCCTTAGCTGAAGCATTTTTTAAACACTAAAAGAGT
AGTATTAGAATATACCTGAGGAACGAGGTAGAATAGCACCCCGTCATAAACATGTTTCCAGGGACGAGAAATTGTACGGATTAGTGTACCAAAGGAGACA
CAAAATCAATTAAGGAATAAAGGACTATTTAAAGAAAAAGATCTAAGAGAGTTTAAGTCTTTGAAGATGTATCCCCTTGATTATTTAATAGAGTTTCTCA
AAATCTTTGTCATGAAATTTGAAAAGTTTAATGAAAGTGAAATTCAAGTTTACACAGAGGGAAGGATGCAATGTTTTGTACCATTCCTTAACAAAATACT
CGAAGAATGAACTTGATGAAATTACTATCGAAATTTGGGACAGTGAAAGATATTGGGTGTATACAATAAAAGTATGAGTTGAGTGGGTAAAGCTTCTCCA
CATTACTTTCTTTTTAGTAGTGGTTTTTTTTGAAATTTATTTATAAAACTTTGGTAGTGAACATCTTTGAATGTCCTTTTTATTTGATTTTTATTCCTCT
TTTTGTTTTGGGATAATGGAATTAATTATTCTATTTGCACAAGGTTCATAGGGGGGGTTTATATCTTCAAACAGGGCATAGCTTGGTGTAGATTATAGCC
CCTAAAATAAAAGGTATAGGGGGTACTTCTGCTTTTCTTTTTTTTCTCTTA
>LE_HBa0162P08_SP6_104030 (trimmed for quality and cloning vector)
AAGACATTTATTAGGACCAACAGGTCACACGACAGGTGCACGATCCCTTTTCCGCGTTCCATAAATGACATGATTCAACTGCCAGTGATTTTAGGAGCTT
CCTGAGAAGAGTAAGTTTAATCCTGTAAATAGCATGATTCCTTAGCTGAAGCATTTTTTAAACACTAAAAGAGTAGTATTAGAATATACCTGAGGAACGA
GGTAGAATAGCACCCCGTCATAAACATGTTTCCAGGGACGAGAAATTGTACGGATTAGTGTACCAAAGGAGACACAAAATCAATTAAGGAATAAAGGACT
ATTTAAAGAAAAAGATCTAAGAGAGTTTAAGTCTTTGAAGATGTATCCCCTTGATTATTTAATAGAGTTTCTCAAAATCTTTGTCATGAAATTTGAAAAG
TTTAATGAAAGTGAAATTCAAGTTTACACAGAGGGAAGGATGCAATGTTTTGTACCATTCCTTAACAAAATACTCGAAGAATGAACTTGATGAAATTACT
ATCGAAATTTGGGACAGTGAAAGATATTGGGTGTATAC

This is probably not a useful sequence.

Problems:
  • Probable foreign DNA contamination
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.937921
Expected error %
0.32415
Sequence Annotations 
Automatic Annotations
Arabidopsis thaliana Mitochondria (screening/organelle/ATH1_mitochondria)NCBI BLAST
mitochondria Score 66 E Value 3e-12 Identity 93.30% Align. Length 44bp (8.18%) Frame 2
No sequence description found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0162P08
Clone
Clone name
hba-162p8
LE_HBa0162P08
P162P08
Clone type
BAC
Contamination
none
Estimated length
131,433
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found