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Clone Read LE_HBa0162M21_T7_103913

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0162M21_T7_103913
Primer
T7
ID from Seq. Facility
LE_HBa_162_M21-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
486 trimmed for vector and quality, 827 raw
Sequence
>LE_HBa0162M21_T7_103913 (raw untrimmed)
TCCGGTCCCCGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTACATCACTTTTTTCAGCCTTCCTTTAAGGACTTCTGAAAAGATCTTATAC
ATACTACCTAAAACTTCTAATAGGTCTGAAGTCCCTCAATTCTTTTCACATTTCTTCTTTTGGGATTAGGGCTATGAATGTAGAATCAGACTTCTTTCCA
ACCTCCCTTGTTCATGGAAGATTTGAAAATTCTCCATTATGTCACCTTTCATCACCTCCCAACATTGGTGCTTTATCAATTGCACACTGCTTTAAACTGC
CTTAGAACTTCCTTGTCAAAGCTTATATCAAGATCCTCCTTTTCCTCCCCTGTCAACTTTGGGCAATTCAAAAAATTGGAACAAATAAATATATTGGTAC
TAGATTGACCTATAGTCTTTCTATTTATCCAGATAGAATTCAAATAGAATTGAAAAAAAGTGAATGTGATAATACAGCACAAAATTTTATTTGAATTCCA
AGTCTTAATAGAAATATTTTTTTGACGAGCTACACCAATTGTACCTATAATAGCCACTAATATTATGGAAATAAGTTCATATGTGATAAATAAAATTATT
TTTTGGCACGTCTCCCCTACTTACCCCTCTGTTTAACGCTTCTAATAGAAATCCTCTTATTTCCCCTTGAATATTTTCTCGAATTGTTGACAATTTTACC
CCTCGTCTCTTTCTTCCACTTTAACCTTTTGTCTCCATTCCTGTCCCACCTTCGCCCTATTTTCCACAGTCGTTATCCCTTCTTTACCCTATCTTCTGTT
CTTCTCTAACAACATTTCTGACTTTAG
>LE_HBa0162M21_T7_103913 (trimmed for quality and cloning vector)
AGCTTGTACATCACTTTTTTCAGCCTTCCTTTAAGGACTTCTGAAAAGATCTTATACATACTACCTAAAACTTCTAATAGGTCTGAAGTCCCTCAATTCT
TTTCACATTTCTTCTTTTGGGATTAGGGCTATGAATGTAGAATCAGACTTCTTTCCAACCTCCCTTGTTCATGGAAGATTTGAAAATTCTCCATTATGTC
ACCTTTCATCACCTCCCAACATTGGTGCTTTATCAATTGCACACTGCTTTAAACTGCCTTAGAACTTCCTTGTCAAAGCTTATATCAAGATCCTCCTTTT
CCTCCCCTGTCAACTTTGGGCAATTCAAAAAATTGGAACAAATAAATATATTGGTACTAGATTGACCTATAGTCTTTCTATTTATCCAGATAGAATTCAA
ATAGAATTGAAAAAAAGTGAATGTGATAATACAGCACAAAATTTTATTTGAATTCCAAGTCTTAATAGAAATATTTTTTTGACGAG

This is probably not a useful sequence.

Problems:
  • Probable foreign DNA contamination
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.930843
Expected error %
1.02174
Sequence Annotations 
Automatic Annotations
Nicotiana tabacum Chloroplast (screening/organelle/nicotiana_tabacum_chloroplast)NCBI BLAST
gi|11465934|ref|NC_001879.1| Score 147 E Value 4e-37 Identity 87.10% Align. Length 138bp (28.40%) Frame 2
Nicotiana tabacum plastid, complete genome
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0162M21
Clone
Clone name
hba-162m21
LE_HBa0162M21
C12HBa0162M21
P162M21
Clone type
BAC
Contamination
none
Estimated length
98,024
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found