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Clone Read LE_HBa0162J19_SP6_103764

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0162J19_SP6_103764
Primer
SP6
ID from Seq. Facility
LE_HBa_162_J19-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
553 trimmed for vector and quality, 891 raw
Genbank Accession
DU093893
Sequence
>LE_HBa0162J19_SP6_103764 (raw untrimmed)
TTTTCTTTCCTTTTTTGGACTACTTTCTCAAATCAAGATTTAGCTTTGAACCAATATTTTCCCATGTTCAAGCCTTTAGCCCAAAACGAAGACTTTGTGG
CGAACACACGTTTGACATGTGATTGCTTTTTCTTTTTCAATTATTATTAAGTTCAAAGTTCAACTACAGGATTGAGCCAAGGTATCAAGAACTGCTGAAA
GAAGACATACCAAGAGCAGAGAATGATGGTGTTAAAGTAAAAGTTATAGCAGGTGAAGCAATGGGAGTCCAATCCCCGGTTTACACACAAACGCCTACAA
TGTACCTCGATTTCACCCTACAACCAACAGCTTACTATCATCAAGCCATCCCTGAATCTTGGAACGCCTTCGTATATATAGTTGAAGGAGAAGGTGTCTT
CGGAATTCCGAGTTCAGGTCCTGTATCAGCTCACCATTGCTTGGTTTTAGGCCCTGGAGAGGGACTTAGTGTATGGAACAAGTCTTCAAAGCCATTAAGA
TTTGTTCTTTTAGGTGGACAACCTCTTAATGAACCTGTGGTTCAACATGGTCCTTTTGTGATGAACTCACAAGATGAAATTGATCAAACATTTGAAGATT
ATCAATATTGCAAGAATGGTTTTTGAGTAATGTTAGATACTGGACATCAGGGCTCTTCAAAAAAATGGAATCTGAAACAATAATACCATGTTTGGTTGGT
TTGGAGTGCTTTTAAAATATGCCCACAGGGCGGTGATCGATTTTCCTCAAAAATCTATCGGTATCTCCTTCTTGGATGGATTTCCATTCTGCTTTTGGCC
AACATTTCTTTCCACACATTCCTAACTATTTAATGATCTAAATTTCACTCCTCCTATTACTCTACCTTCCTTTTCTATATATTTATCATTA
>LE_HBa0162J19_SP6_103764 (trimmed for quality and cloning vector)
TCAAATCAAGATTTAGCTTTGAACCAATATTTTCCCATGTTCAAGCCTTTAGCCCAAAACGAAGACTTTGTGGCGAACACACGTTTGACATGTGATTGCT
TTTTCTTTTTCAATTATTATTAAGTTCAAAGTTCAACTACAGGATTGAGCCAAGGTATCAAGAACTGCTGAAAGAAGACATACCAAGAGCAGAGAATGAT
GGTGTTAAAGTAAAAGTTATAGCAGGTGAAGCAATGGGAGTCCAATCCCCGGTTTACACACAAACGCCTACAATGTACCTCGATTTCACCCTACAACCAA
CAGCTTACTATCATCAAGCCATCCCTGAATCTTGGAACGCCTTCGTATATATAGTTGAAGGAGAAGGTGTCTTCGGAATTCCGAGTTCAGGTCCTGTATC
AGCTCACCATTGCTTGGTTTTAGGCCCTGGAGAGGGACTTAGTGTATGGAACAAGTCTTCAAAGCCATTAAGATTTGTTCTTTTAGGTGGACAACCTCTT
AATGAACCTGTGGTTCAACATGGTCCTTTTGTGATGAACTCACAAGATGAAAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.963257
Expected error %
0.561246
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g43120.1 Score 189 E Value 8e-49 Identity 23.00% Align. Length 407bp (73.60%) Frame 1
68415.m05355 pirin, putative similar to SP|O00625 Pirin {Homo sapiens}; contains Pfam profile PF02678: Pirin
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g59220.1 Score 186 E Value 9e-48 Identity 22.00% Align. Length 404bp (73.06%) Frame 1
68416.m06602 pirin, putative similar to SP|O00625 Pirin {Homo sapiens}; contains Pfam profile PF02678: Pirin
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_470396.1| Score 221 E Value 6e-57 Identity 24.50% Align. Length 407bp (73.60%) Frame 1
putative pirin-like protein [Oryza sativa (japonica cultivar-group)] gb|AAS07362.1| putative pirin-like protein [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF22236.1| Score 218 E Value 7e-56 Identity 24.50% Align. Length 407bp (73.60%) Frame 1
pirin [Lycopersicon esculentum] sp|Q9SEE4|PIRL_LYCES Pirin-like protein
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0162J19
Clone
Clone name
hba-162j19
LE_HBa0162J19
P162J19
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found