Clone Read LE_HBa0162I22_SP6_103722

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0162I22_SP6_103722
Primer
SP6
ID from Seq. Facility
LE_HBa_162_I22-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
525 trimmed for vector and quality, 829 raw
Genbank Accession
DU093870
Sequence
>LE_HBa0162I22_SP6_103722 (raw untrimmed)
TTTTTTCCTACGGCAGCAGCAGCAGCAGAGAGGGTTTTTGGGAAGAAGGGGGCAATTGAAAAATGGCGTCACCCATCAAGGGCCTAGAGAAGATGAGTGT
GGAGCAACTTAAAGCCCTTAAAGAACAAGCCGATCTAGAAGTGAACCTTCTTCAGGATAGCCTCAATAACATCCGTACAGCAACTACTCGACTGGAAATC
GCATCTAATGCCCTTCAAGATCTGTCACTACGCCCTCAAGGTTTGTGTTCATTCTCGTTTTGGTAAATACCCTTTTGGAAATTAGGTGAAAAAGATTATT
TTTTTTTATTGTGAAGTTTATGATGTGGGGTTTGGTTTGTTATGCTTCTCAGGGAAGAAAATGTTGGTTTGTGTCAATGGTTTATTGTAAAACACCCTTT
AAGGAGTTAGGTGTGAAAGATTGTTCTTTTGACTTTATTGTGAAATTTATGATATGGGTTTTGGTTTTCTTGCTCAGGGAAGAAAATGTTGGTTTGTATC
CTGTACTGCAACACAGCTTTTTAGGAATTAGGTGCTAAAGATTGTTCTTTTGACTTTATTGTGAAATTTATGATATGGTTTTTGGTTTTTGATACTGTGT
TTTCTTGTTCAGGGTGTGTCCCTCTTTTACGGGCAAACCACCCTTTTAGGAATTATGTGTAGAAGATTGTTTTTTGGACTTCAAAGTTGATAATTTATGA
TTTCGTGTTTGGGTTTTCGTTGCTAAAAGGAAGAAAATGTTGGGTGGGTTTCTTCTTGTTCATCGTATAATATTGTTTCTTTGATTTATGGTTTATAATA
TTGAGTCTTTGTTATGTTTTTGTTATTAT
>LE_HBa0162I22_SP6_103722 (trimmed for quality and cloning vector)
AGCAGAGAGGGTTTTTGGGAAGAAGGGGGCAATTGAAAAATGGCGTCACCCATCAAGGGCCTAGAGAAGATGAGTGTGGAGCAACTTAAAGCCCTTAAAG
AACAAGCCGATCTAGAAGTGAACCTTCTTCAGGATAGCCTCAATAACATCCGTACAGCAACTACTCGACTGGAAATCGCATCTAATGCCCTTCAAGATCT
GTCACTACGCCCTCAAGGTTTGTGTTCATTCTCGTTTTGGTAAATACCCTTTTGGAAATTAGGTGAAAAAGATTATTTTTTTTTATTGTGAAGTTTATGA
TGTGGGGTTTGGTTTGTTATGCTTCTCAGGGAAGAAAATGTTGGTTTGTGTCAATGGTTTATTGTAAAACACCCTTTAAGGAGTTAGGTGTGAAAGATTG
TTCTTTTGACTTTATTGTGAAATTTATGATATGGGTTTTGGTTTTCTTGCTCAGGGAAGAAAATGTTGGTTTGTATCCTGTACTGCAACACAGCTTTTTA
GGAATTAGGTGCTAAAGATTGTTCT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.948294
Expected error %
0.727728
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g23290.1 Score 86 E Value 9e-18 Identity 27.00% Align. Length 158bp (30.10%) Frame 2
68418.m02725 c-myc binding protein, putative / prefoldin, putative similar to Swiss-Prot:Q99471 prefoldin subunit 5 (C-myc binding protein Mm-1) (Myc modulator 1) [Homo sapiens]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM20040.1| Score 86 E Value 4e-16 Identity 27.00% Align. Length 158bp (30.10%) Frame 2
putative c-myc binding protein MM-1 [Arabidopsis thaliana] gb|AAL36313.1| putative c-myc binding protein MM-1 [Arabidopsis thaliana] dbj|BAB11184.1| c-myc binding protein MM-1-like protein [Arabidopsis thaliana] ref|NP_197720.1| c-myc binding protein, putative / prefoldin, putative [Arabidopsis thaliana] sp|P57742|PFD5_ARATH Probable prefoldin subunit 5
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP54369.1| Score 82 E Value 7e-15 Identity 25.60% Align. Length 179bp (34.10%) Frame 2
putative c-myc binding protein [Oryza sativa (japonica cultivar-group)] ref|NP_922082.1| putative c-myc binding protein [Oryza sativa (japonica cultivar-group)] gb|AAL31068.1| putative c-myc binding protein [Oryza sativa]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0162I22
Clone
Clone name
hba-162i22
LE_HBa0162I22
P162I22
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found