Clone Read LE_HBa0158F04_T7_102775

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0158F04_T7_102775
Primer
T7
ID from Seq. Facility
LE_HBa_158_F04-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
611 trimmed for vector and quality, 783 raw
Genbank Accession
DU093332
Sequence
>LE_HBa0158F04_T7_102775 (raw untrimmed)
CGGGAACCCGGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTAGAATGATGAGCTAGTCAGAACCCACTTTTCTTGTTAGTTGGTCTCTGGCAT
CCAAATCAAGTTCAATCACTTTCTGGCCAGAAAGAACCTGTAAAGCTACTATACCAAAGCTGTAAATGTCACTTGCACACGTCAATTTCGCGTTACTCAT
ATATTCTGGATCCATATAACCTATCGTCCCTCGTACATCTGTAAACACTTTGCTCTCTTCCATTCCCAACATCTTTGCCAGTCCAAAATCTGATAGCTTT
GCATCCAGATCCTCTGTTAAGAGGATATTTGTAAGCTGCACACATCGTAATTCACAAAAAAAGAAAGTAAATATAAATATTATCATAAGAAATACAATTC
AAGAGAAATGATTTAGTAGCTGATACCTTAATATCTCTATGAACAATGAATCCATCTATGTAGCTGTGGAGATACCTCAATGCAAGTGCACAATCTCTTA
AGATTTTTACCCTTTGTTCCCAACTTAGGACCATGTCTTTCCCTAAAAAAAAAATTAACACGTTTATTAGTAACATAAAGAGGGTGAAAACGATCGATTT
TGAAAAATTACTCTACTCTACTTACTCAGAAGATGTTGAGCTAGATTTTCCAGCAGAGCAATACTCGTAGACTAAATATTGTTCACCGGCCCTCAATGCA
ACACCCAAAGGAGGCAAACAATATTAGGATTTCTGACTCCTGGAAGATTTTCCAGTTCTCAACTGAAAAGAATCTGACGTTTT
>LE_HBa0158F04_T7_102775 (trimmed for quality and cloning vector)
AGCTTAGAATGATGAGCTAGTCAGAACCCACTTTTCTTGTTAGTTGGTCTCTGGCATCCAAATCAAGTTCAATCACTTTCTGGCCAGAAAGAACCTGTAA
AGCTACTATACCAAAGCTGTAAATGTCACTTGCACACGTCAATTTCGCGTTACTCATATATTCTGGATCCATATAACCTATCGTCCCTCGTACATCTGTA
AACACTTTGCTCTCTTCCATTCCCAACATCTTTGCCAGTCCAAAATCTGATAGCTTTGCATCCAGATCCTCTGTTAAGAGGATATTTGTAAGCTGCACAC
ATCGTAATTCACAAAAAAAGAAAGTAAATATAAATATTATCATAAGAAATACAATTCAAGAGAAATGATTTAGTAGCTGATACCTTAATATCTCTATGAA
CAATGAATCCATCTATGTAGCTGTGGAGATACCTCAATGCAAGTGCACAATCTCTTAAGATTTTTACCCTTTGTTCCCAACTTAGGACCATGTCTTTCCC
TAAAAAAAAAATTAACACGTTTATTAGTAACATAAAGAGGGTGAAAACGATCGATTTTGAAAAATTACTCTACTCTACTTACTCAGAAGATGTTGAGCTA
GATTTTCCAGC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.952029
Expected error %
0.279523
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g26330.1 Score 86 E Value 7e-22 Identity 44.20% Align. Length 477bp (78.07%) Frame 3
68415.m03159 leucine-rich repeat protein kinase, putative (ERECTA) identical to uncharacterized receptor protein kinase ERECTA [Arabidopsis thaliana] gi|1389566|dbj|BAA11869; contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g02070.1 Score 85 E Value 4e-21 Identity 47.70% Align. Length 438bp (71.69%) Frame 3
68418.m00128 protein kinase-related contains eukaryotic protein kinase domain, INTERPRO:IPR000719
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAX96169.1| Score 145 E Value 2e-45 Identity 78.00% Align. Length 471bp (77.09%) Frame 3
Protein kinase domain, putative [Oryza sativa (japonica cultivar-group)] gb|AAX92785.1| hypothetical protein LOC_Os11g26140 [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAD40939.1| Score 88 E Value 5e-24 Identity 52.50% Align. Length 480bp (78.56%) Frame 3
OSJNBb0048E02.15 [Oryza sativa (japonica cultivar-group)] ref|XP_472794.1| OSJNBb0048E02.15 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0158F04
Clone
Clone name
hba-158f4
LE_HBa0158F04
P158F04
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found