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Clone Read LE_HBa0158D06_SP6_102682

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0158D06_SP6_102682
Primer
SP6
ID from Seq. Facility
LE_HBa_158_D06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
362 trimmed for vector and quality, 907 raw
Sequence
>LE_HBa0158D06_SP6_102682 (raw untrimmed)
GCGGGCTTTGCGGTCACAAATCTATATAAAAATGAAAACACATTCATGAATACTTCAAGTCTCAACGTCAAGTTCCGTAAAGGGTACACGTCGAGAAGTC
TCAAAAATGATAGACCTTTAGAAAGACTAACTTTCTTCATCAAATTCGGCAAGCCTATACATTGAAAAGTCTAAATCAAAACACACTTATGAATACTTCA
AATCTCGTCATCAAGTTTCGCCAAGCCTATATGTTAACAAATATCGAAGTAAGGGTGGAAAATGGGTGGTTTGGATTGGATTTTGATGGATTGAGTGGGA
ATGGAGTTTAACATTCGATTCGCCTCTGACCATCAAATGAAATGTGAAGAACCCGTCCTCCTCTCGGTGAAAGAAGGGGCGCTTCCGGTTCAGTGGGTGC
TGGAAACAAGTGTGTCTTCTCCATAGTACTATATATCTAGGGTCAATGATTTTATAGGAGGAACTACAGAGCTCAATCACTTGCTGCCGATACTCTTCAG
TTTTCGGTTGAGGTCTGTCCTGCAGAGGTACTCAGATTGGATGGGCGATCGATTTCTACGTCATGATCGCAACTTAATAAAGTATACATATTACGAAATC
TAGAGTTGATGGCCTAACATAAAGTATGGCACAATACAATATATGGCTGAGCTCTAGAGGCGTAAAAATTGTATACTCCCATAGCTGAACTCTGGGAGCG
TAATTCTGTATAGGACGGAATATCAGAGGGGATTATAATGAGAAGGGAACAAAAACCAGCTGGTTGCACAAAGTATATGGAGAGTTGGTAAAGGATTTAG
TATGGATTCGAGTTAGTACGAGGAAATGGTTCCAGTCTGAGAAGTGTAATGCTAAATGTCAGTCAAGAGAGCACTGAAAATACCATGGTAGAGAGCCACG
AGGAAGC
>LE_HBa0158D06_SP6_102682 (trimmed for quality and cloning vector)
CAAATCTATATAAAAATGAAAACACATTCATGAATACTTCAAGTCTCAACGTCAAGTTCCGTAAAGGGTACACGTCGAGAAGTCTCAAAAATGATAGACC
TTTAGAAAGACTAACTTTCTTCATCAAATTCGGCAAGCCTATACATTGAAAAGTCTAAATCAAAACACACTTATGAATACTTCAAATCTCGTCATCAAGT
TTCGCCAAGCCTATATGTTAACAAATATCGAAGTAAGGGTGGAAAATGGGTGGTTTGGATTGGATTTTGATGGATTGAGTGGGAATGGAGTTTAACATTC
GATTCGCCTCTGACCATCAAATGAAATGTGAAGAACCCGTCCTCCTCTCGGTGAAAGAAGGG

This is probably not a useful sequence.

Problems:
  • Probable foreign DNA contamination
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.953135
Expected error %
1.11888
Sequence Annotations 
Automatic Annotations
Nicotiana tabacum Chloroplast (screening/organelle/nicotiana_tabacum_chloroplast)NCBI BLAST
gi|11465934|ref|NC_001879.1| Score 101 E Value 1e-23 Identity 93.00% Align. Length 70bp (19.34%) Frame 2
Nicotiana tabacum plastid, complete genome
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0158D06
Clone
Clone name
hba-158d6
LE_HBa0158D06
P158D06
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found