Clone Read LE_HBa0156P18_SP6_102514

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0156P18_SP6_102514
Primer
SP6
ID from Seq. Facility
LE_HBa_156_P18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
610 trimmed for vector and quality, 811 raw
Sequence
>LE_HBa0156P18_SP6_102514 (raw untrimmed)
CATGGTAAGAATTGGCTTTGGATGAAGAGATTCTTANGGGGAAGAACTTGGTTGTGCTCAAGAGAGGTATGTGCCTTTTTATGACAGTCAAAGTGCTATA
CATCTTGGCAAGAATTCTACGTTCCATGGTCGGTCTAAACACATTGATGTGAGATACCATTGGATTCGAGATGTGTTGGATTCTAAATTGCTTGAGCTTG
AAAAGATTCATACAAATGACAATGGTTCCGATATGATGACTAAAGCTTTGCCAAGAGGGAAGTTTGAAGATTGTTGCATGGTCGCCGGGATGGCGGTCTC
CTCCACATAGTCGTGAGGGGGAGAATTGTTGGGTTATGGGCCATTTTTACCCATAGGCCCATTCTTATGAGGCAAATATAAGCCTATTTAGGTCTTATCT
TCATATACACAGAGAGTTTTTTCAGCAGCCAAAAAGAGAGAAAGAGAGCAGTTTTCGCAGTCAAAATTCAGCCCTAACATCCAACTTCAAATTGCGATTC
CCGCTTCGTTTCTTGTCTGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAAAGTTGGATGTGGTTGCCTGA
AGCTTCAGTTTTGCTATCGTGAATAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCGTTATTTTGTTGTTGCTCGTC
GNCCGGGATGTGTTTTGTGAGCAATTTTGAAGAACAATAATTGTAAACTTTTTGGTGATATATGTGGAGCTTTGGGTCTCTTGTTTATTAATCTTCCATC
GAAATGGTTTA
>LE_HBa0156P18_SP6_102514 (trimmed for quality and cloning vector)
AACTTGGTTGTGCTCAAGAGAGGTATGTGCCTTTTTATGACAGTCAAAGTGCTATACATCTTGGCAAGAATTCTACGTTCCATGGTCGGTCTAAACACAT
TGATGTGAGATACCATTGGATTCGAGATGTGTTGGATTCTAAATTGCTTGAGCTTGAAAAGATTCATACAAATGACAATGGTTCCGATATGATGACTAAA
GCTTTGCCAAGAGGGAAGTTTGAAGATTGTTGCATGGTCGCCGGGATGGCGGTCTCCTCCACATAGTCGTGAGGGGGAGAATTGTTGGGTTATGGGCCAT
TTTTACCCATAGGCCCATTCTTATGAGGCAAATATAAGCCTATTTAGGTCTTATCTTCATATACACAGAGAGTTTTTTCAGCAGCCAAAAAGAGAGAAAG
AGAGCAGTTTTCGCAGTCAAAATTCAGCCCTAACATCCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCTGATTGAGCTGATTTTTGGACAGCATA
TTATCTTCATCTCAATCTTTGATTAGGAACTGACAAAGTTGGATGTGGTTGCCTGAAGCTTCAGTTTTGCTATCGTGAATAGTAGCTGCGAAATTGGTGA
TTTTGCTCCT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.974753
Expected error %
0.104553
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T02206 Score 120 E Value 2e-26 Identity 22.80% Align. Length 245bp (40.16%) Frame 1
hypothetical protein - common tobacco retrotransposon Tto1 dbj|BAA11674.1| ORF(AA 1-1338) [Nicotiana tabacum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAW22873.1| Score 102 E Value 5e-21 Identity 18.50% Align. Length 248bp (40.66%) Frame 1
putative polyprotein [Lycopersicon esculentum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0156P18
Clone
Clone name
hba-156p18
LE_HBa0156P18
P156P18
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found