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Clone Read LE_HBa0156P04_SP6_102486

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0156P04_SP6_102486
Primer
SP6
ID from Seq. Facility
LE_HBa_156_P04-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
654 trimmed for vector and quality, 791 raw
Sequence
>LE_HBa0156P04_SP6_102486 (raw untrimmed)
TCTTGTTCAGGAGGTTTGCACTGGCATTAAAGGCGTACTCATGCCAAAATTCGTGCAATGGCCTAATGAGGACTTTTACAGGAACGAGATCAAAAGTGAA
TTCCAGATGTTATCCCTTATGCCAAATGTAGGTGGATCTATTTACACAACACATGTTCCAATAATCGCCCCAAAAGTAAGTGTAGCTGCTTATTTCAACA
AAAGGCATACAGAAAGGAATCAGAAAACTTCATACTCCGTTACAGTTCAAGGTGTTGTGGATCCAAAAGGGGTTTTCACAGATGTTTGCATCGGTTGGCC
TGGTTCGATGTCTGATGACAAAGTATTGGAAAAATCAGCTCTGTATCAGAGAGCAAACAGGGGACAGTTGAAGGATACTTGGGTTGTAGGAAATTCAGGG
TATCCATTAATGGATTGGGTATTAGCTCCTTACACACGCCAAAATCTTACTTGGACTCAACATGCTTTTAATGAAAAAGTAGGGGAAGTCCAAAAGGTTG
CTAAAGAGGCGTTTATGCGAATGAAAGCTAGGTGGAGCTGCTTACGCAAGAGAACAGAAGTGAAGCTTCAAGATTTGCCTGTGGTATTGGGGGCTTGCTG
TGTATTGCATAATATTTGCGAGATGAGAGGTGAACAACTGAATCCAGGGCTGAGATTTGATCTTTTCGATGATGAAATGGTTTCACACAATATTGTGAGG
TCAATGAATGCTGTACAAGCTAGGGGATCAAATTGCTCACCAACTCTTGCATCAAAATCATGACAGACTAAAATTTCCTTTAACAAAAAAT
>LE_HBa0156P04_SP6_102486 (trimmed for quality and cloning vector)
ATTAAAGGCGTACTCATGCCAAAATTCGTGCAATGGCCTAATGAGGACTTTTACAGGAACGAGATCAAAAGTGAATTCCAGATGTTATCCCTTATGCCAA
ATGTAGGTGGATCTATTTACACAACACATGTTCCAATAATCGCCCCAAAAGTAAGTGTAGCTGCTTATTTCAACAAAAGGCATACAGAAAGGAATCAGAA
AACTTCATACTCCGTTACAGTTCAAGGTGTTGTGGATCCAAAAGGGGTTTTCACAGATGTTTGCATCGGTTGGCCTGGTTCGATGTCTGATGACAAAGTA
TTGGAAAAATCAGCTCTGTATCAGAGAGCAAACAGGGGACAGTTGAAGGATACTTGGGTTGTAGGAAATTCAGGGTATCCATTAATGGATTGGGTATTAG
CTCCTTACACACGCCAAAATCTTACTTGGACTCAACATGCTTTTAATGAAAAAGTAGGGGAAGTCCAAAAGGTTGCTAAAGAGGCGTTTATGCGAATGAA
AGCTAGGTGGAGCTGCTTACGCAAGAGAACAGAAGTGAAGCTTCAAGATTTGCCTGTGGTATTGGGGGCTTGCTGTGTATTGCATAATATTTGCGAGATG
AGAGGTGAACAACTGAATCCAGGGCTGAGATTTGATCTTTTCGATGATGAAATG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.973065
Expected error %
0.419334
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g12010.1 Score 337 E Value 3e-93 Identity 24.20% Align. Length 653bp (99.85%) Frame 2
68418.m01404 expressed protein
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g29780.1 Score 318 E Value 1e-87 Identity 23.10% Align. Length 647bp (98.93%) Frame 2
68417.m04241 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB87674.1| Score 337 E Value 1e-91 Identity 24.20% Align. Length 653bp (99.85%) Frame 2
putative protein [Arabidopsis thaliana] gb|AAN73294.1| At5g12010/F14F18_180 [Arabidopsis thaliana] ref|NP_196762.1| expressed protein [Arabidopsis thaliana] gb|AAL24182.1| AT5g12010/F14F18_180 [Arabidopsis thaliana] pir||T48560 hypothetical protein F14F18.180 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_463361.1| Score 325 E Value 6e-88 Identity 23.50% Align. Length 650bp (99.39%) Frame 2
B1097D05.23 [Oryza sativa (japonica cultivar-group)] dbj|BAC05572.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0156P04
Clone
Clone name
hba-156p4
LE_HBa0156P04
C12HBa0156P04
P156P04
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found