Clone Read LE_HBa0156G05_SP6_102056

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0156G05_SP6_102056
Primer
SP6
ID from Seq. Facility
LE_HBa_156_G05-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
404 trimmed for vector and quality, 1028 raw
Sequence
>LE_HBa0156G05_SP6_102056 (raw untrimmed)
GGGGGGGATGATTTCACAAATTCTTAAATTTGGGAATATAATGGATATATCGAAAGAACCAGATGCATTTCGTGTAATCATAAACATATATTGGATAAAA
TTGAAAACCATCCATTGAAATTTCTGGTGAGGGACACCAAACATCCGCAAAAATATATTTGAAAGGGGAATTGATCTTTATTGTAGAGTTGCAGAAATAA
AACTTATGCATTTTACTGCATTTACACGAACTACAAAGAAGGATTTTTGTAAAGAAGATGAAATGGCTAAAAGCTTGAAAACGTGATGGAGAGTGGGAGA
GGATGGGTGACCTAGATGTCGATGCTAGTTGGAATGACTTGTGGTTATGGTGGTTGTCAGGTCTTGAGGAGACATTGGCAATCGAAGAGATTAAGGTTAT
GGATAAACACTTGTTCAGGTTTCCCTGCTAGAAGAGGCACCCCGTGCGAAAGTCCTTTACAAAAAATGAATAATGTAAGAATGTGATAGACACATCACCC
CCCATTACNAAGTTGATGTAAGGATATCAGGTAATTTCTCTTCGTATGCAACATAAGAAATATCGCAGAAGGTTGAAGACGCGAGTTGCGAAGGCAAACA
TCTCCTAAAATGTATGATTGACTATGGATAGCTTTTTTAGAATCCGGCCAGCCTCGTGCGCAGCTTTATCCTGATCCTAGTGTTGAGAAATAGTTCCCGA
ATCGTGTAGCACATCAGGGCGAGTACCGACAACGAAGAGAATAATAGAACCTCATATGAAAGGAGAATGATATAGAAGTTAATAATTCGTTTATGTGTTC
CAAAATAACACCTTGTGCTACCTGCTCAAGGCATGCGAGGATGGACAGNTAGTGAATGTTAGATTGATGGGTTAGTTGATAAAGAGATGTATAAGGTTAT
ACAAGCTAGAATTATTTTTTTTCTGACTTAGTTATCAGCTTCTACCGATACGTCTCTCTTACTATAGCCTATCTCTCGTTACTTCCACATCTACCTAGGA
TGGCGTCGCGCGGCCCGCGCCACCCCCC
>LE_HBa0156G05_SP6_102056 (trimmed for quality and cloning vector)
AATTTGGGAATATAATGGATATATCGAAAGAACCAGATGCATTTCGTGTAATCATAAACATATATTGGATAAAATTGAAAACCATCCATTGAAATTTCTG
GTGAGGGACACCAAACATCCGCAAAAATATATTTGAAAGGGGAATTGATCTTTATTGTAGAGTTGCAGAAATAAAACTTATGCATTTTACTGCATTTACA
CGAACTACAAAGAAGGATTTTTGTAAAGAAGATGAAATGGCTAAAAGCTTGAAAACGTGATGGAGAGTGGGAGAGGATGGGTGACCTAGATGTCGATGCT
AGTTGGAATGACTTGTGGTTATGGTGGTTGTCAGGTCTTGAGGAGACATTGGCAATCGAAGAGATTAAGGTTATGGATAAACACTTGTTCAGGTTTCCCT
GCTA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.940058
Expected error %
0.268164
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAA78426.1| Score 64 E Value 7e-11 Identity 43.10% Align. Length 286bp (70.79%) Frame 1
polyprotein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB77781.1| Score 64 E Value 7e-11 Identity 43.10% Align. Length 286bp (70.79%) Frame 1
putative polyprotein of LTR transposon [Arabidopsis thaliana] gb|AAC79110.1| putative polyprotein of LTR transposon [Arabidopsis thaliana] pir||T01397 LTR gag/pol polyprotein homolog T4I9.16 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0156G05
Clone
Clone name
hba-156g5
LE_HBa0156G05
P156G05
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found