Clone Read LE_HBa0156C03_T7_101861

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0156C03_T7_101861
Primer
T7
ID from Seq. Facility
LE_HBa_156_C03-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
560 trimmed for vector and quality, 972 raw
Sequence
>LE_HBa0156C03_T7_101861 (raw untrimmed)
CCAACCCGGGCCCGGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGATTGTGGCTTAGGGTATAATTCAAGAAATACGCCAAATCAGTGTAA
GTCTAAACTCTAGCATACAATGTAAGTGTTCAAGGTCTGAGAATGTTTGCTTTATTTGAAAATTTGAAGGACTTAAAACGAAAGCTTGATTATGGCTTAG
GGTTCGAATTCAAGAAATACACCTAATCAGAATAAGTCTAACGAATGAAACTCTAGCATACATTGTAATGTTCAAGGTCTGAGAGTGTTTGCTTTATTTG
AAAATTATGGCAAAACTACAAAAGTACCCGGAATACTGTCTTATCTCCCCAAATAACAAATGTCTCATTGCATGTATGGTGTCTGTGGTTGCCTCTAAGA
CCACCAGATCTGATCTCACCCAAATGAACTGAAGCACAAACTGCTGCCCCACCTGAACCAAGCATAACCTCCCTTTGTCAATAGGAAAAATCGATTGAAG
AATGACAAATACAATTCGTTTGAAATATTCTTCTTCCTCCTTTTTTTTTCTCTTGGAGTATGAAATGTTTAAATTCATCTTAGCCGAAAGAAACTAAAAC
CAAGGGCAAGACAACATTTGAGCAACATCGATCCCCCACGCTTAACACTGGACTAAAAAAGCTAGGAACCCCTCCAAGATTAACCCCCTCGTCTTCACCA
AAAAATCAATTTCAAAGAATCGCCCATTTCTCTACTTCCCACCGTTCTAATTACCCACCCACGTAACATTTTTTCTTGCCACAAAGATAACAATAACTGA
CCTTAAATTGCCTATAATGCTAAAATAAGCATCATCAATTCCCTGCCAAACAAACCTTCCTTTCCTACACCCCCCTGAACAAATACTCCCCCCAACTAAC
TCATTCATTACCGTTTAACATACCACCCGCACACTCGACTCATTAAACTCCAGACTTTTGCCTTTTCTAAGT
>LE_HBa0156C03_T7_101861 (trimmed for quality and cloning vector)
AGCTTGATTGTGGCTTAGGGTATAATTCAAGAAATACGCCAAATCAGTGTAAGTCTAAACTCTAGCATACAATGTAAGTGTTCAAGGTCTGAGAATGTTT
GCTTTATTTGAAAATTTGAAGGACTTAAAACGAAAGCTTGATTATGGCTTAGGGTTCGAATTCAAGAAATACACCTAATCAGAATAAGTCTAACGAATGA
AACTCTAGCATACATTGTAATGTTCAAGGTCTGAGAGTGTTTGCTTTATTTGAAAATTATGGCAAAACTACAAAAGTACCCGGAATACTGTCTTATCTCC
CCAAATAACAAATGTCTCATTGCATGTATGGTGTCTGTGGTTGCCTCTAAGACCACCAGATCTGATCTCACCCAAATGAACTGAAGCACAAACTGCTGCC
CCACCTGAACCAAGCATAACCTCCCTTTGTCAATAGGAAAAATCGATTGAAGAATGACAAATACAATTCGTTTGAAATATTCTTCTTCCTCCTTTTTTTT
TCTCTTGGAGTATGAAATGTTTAAATTCATCTTAGCCGAAAGAAACTAAAACCAAGGGCA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.960766
Expected error %
1.10752
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g56820.1 Score 83 E Value 1e-16 Identity 27.10% Align. Length 128bp (22.86%) Frame 2
68416.m06319 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAC00745.1| Score 83 E Value 5e-15 Identity 27.30% Align. Length 131bp (23.39%) Frame 2
hypothetical protein [Arabidopsis thaliana] pir||T51270 hypothetical protein T8M16_150 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAN31078.1| Score 83 E Value 5e-15 Identity 27.10% Align. Length 128bp (22.86%) Frame 2
At3g56820/T8M16_150 [Arabidopsis thaliana] gb|AAM66975.1| unknown [Arabidopsis thaliana] gb|AAK95325.1| AT3g56820/T8M16_150 [Arabidopsis thaliana] ref|NP_567041.1| expressed protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0156C03
Clone
Clone name
hba-156c3
LE_HBa0156C03
C10HBa0156C03
P156C03
Clone type
BAC
Contamination
none
Estimated length
127,053
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found