Clone Read LE_HBa0148L11_SP6_101540

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0148L11_SP6_101540
Primer
SP6
ID from Seq. Facility
LE_HBa_148_L11-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
443 trimmed for vector and quality, 844 raw
Genbank Accession
DU092082
Sequence
>LE_HBa0148L11_SP6_101540 (raw untrimmed)
ACAACAATGCACCTGGTAGCGTAGTAGGTTTCATCATAGGTATACTCTTCTCGAATGATTGTGTAAACCTCATTGACACCCATAACGAACTGACTCAATC
GCCTCTCTTGCTGCGAACCTTATGCATAGTGGCCCTGGCTCCACAATTGCAAAGGCAGATGAACTGATTTTTAACACATGATGTGTTAAATTCCTCCCAC
AGCTTTTTCATCCTAGTATAGTAAGAGGTGATGTCTAGTGTACCTTGGCTGAGATCGTTAATTTCCTTTTGAATTTTATACAACTTTGGTTCATTGGTTT
GGTCATAACGATCTTATAGCTCACTTCATAATTCTAGTGAATTGAACACATACTCCACACTGTATGCAATGTCTTTGCTCAGTAAATTCAAAATCAAGGA
AGATACCATAGCATCACATCTTTCCATTGTCGATAATCAAGAGAATCTGGGGATGGCTTCATGCATTCCCCATTAATGAACCCTAATTTGTTCTTCACTG
ACATTTGATTCATCCCATTTCCTTTTATTGGGCGAGAGGTTTTTGGAAAACGCTAAAAATACCACAAATTTATTGGAACATTTATGGTATCGCTATCTGC
ATACGACCCAACCATCAATTTTCGCGGTGACCCTGCTATGTTTGGTAAACACTCTGGCATGAGCAGTCATTGCTGTACTTGTATACTAACATTACCTGCC
TAGACAAAAATAAAAATTTTATAACCTACACGCCAAACTCAAACCCCCCTATGTTTCACTTCTTACTATATTTTCACCTGAATTTCTCTATCAAAATCCA
TCTATGCACGTTCCATCCTCGCCCTACTCGGCACCCACCGCCCA
>LE_HBa0148L11_SP6_101540 (trimmed for quality and cloning vector)
CATAGGTATACTCTTCTCGAATGATTGTGTAAACCTCATTGACACCCATAACGAACTGACTCAATCGCCTCTCTTGCTGCGAACCTTATGCATAGTGGCC
CTGGCTCCACAATTGCAAAGGCAGATGAACTGATTTTTAACACATGATGTGTTAAATTCCTCCCACAGCTTTTTCATCCTAGTATAGTAAGAGGTGATGT
CTAGTGTACCTTGGCTGAGATCGTTAATTTCCTTTTGAATTTTATACAACTTTGGTTCATTGGTTTGGTCATAACGATCTTATAGCTCACTTCATAATTC
TAGTGAATTGAACACATACTCCACACTGTATGCAATGTCTTTGCTCAGTAAATTCAAAATCAAGGAAGATACCATAGCATCACATCTTTCCATTGTCGAT
AATCAAGAGAATCTGGGGATGGCTTCATGCATTCCCCATTAAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.967058
Expected error %
0.28954
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT40537.1| Score 125 E Value 3e-28 Identity 17.80% Align. Length 341bp (76.98%) Frame 2
hypothetical protein PGEC407.3 [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89730.1| Score 81 E Value 3e-16 Identity 40.00% Align. Length 367bp (82.84%) Frame 3
putative polyprotein [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0148L11
Clone
Clone name
hba-148l11
LE_HBa0148L11
C10HBa0148L11
P148L11
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found