Clone Read LE_HBa0148K11_SP6_101492

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0148K11_SP6_101492
Primer
SP6
ID from Seq. Facility
LE_HBa_148_K11-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 873 raw
Sequence
>LE_HBa0148K11_SP6_101492 (raw untrimmed)
CATGCTGCTATTAAGGGGCGGAGACCCCCCCATCTAGCTCGACACAGAGCGGAGACACTCCGTCCGTGGCCTTGACCTCCTCGGTTGTGGATCTGGTCTG
CCGCTGGTGTGGGGCGTGGCTGGCGTCTCGCTAGCGCGAGGGAGTTAGGGAATGTCTCTCATGCCTGGTGAGGTGACGCAATCCTTGGGTGCTGCGCTGT
TATCCCGTAGAATCTACGACAAAGCGCTACAACTAGCTCATGAGTCCAAAGTATAGCTGGACACAGAGCCGTAGGTGGTGAGCTAGATCCGTCTGGATCA
TCTGAGTTGTTAGTGGTTGACGTCGGTTGTGTGTGGCGCCTGCCCGGTGGTGTTTGTCTGCATGTAGTCGTTTGTCAGCGGATCGCCGTCAACGACGAAC
AGGAGGCACGCCGTCTGATGAAGGAGAGAGGAGCCGGCGATGAGATAGGGGCATTAAACATGGAGTCGATTGGACGGACGGAGTGAGTCCCGGGACCCTN
TCGAAGTCGTGCTCAAGACGCTACCGAGCCGCCTACGTGTGACTGAGGTTGGGGCACAGAAGACGATGAAGAAGTAGGTGCCGCGTTGGCTTCATGGAGG
CTATCGAGGGCGCATGCACTGTGAGTAGCTGCGTGATCACCAGCACGGTGCCCTCGTGAATCGGCTGGGGGCGCGGCTCGTTAGGAGGTGGCAGGCTGGT
GCTCTATCATTGTAGAGGATTATAATGTCGAGAGTGGGCGGCTCGACCCTTACTGAAGTTTGTGGTAGTTGCTTCATCAATATGTTAAACATCTGATGAT
CTTGAATATCTCTTACACTTATCCGATCGTTACACTCCACTGCGCNATAACGAGCTCAGTCTAAGGATCGNAC
>LE_HBa0148K11_SP6_101492 (trimmed for quality and cloning vector)
C

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
  • High predicted error rate
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0148K11
Clone
Clone name
hba-148k11
LE_HBa0148K11
C02HBa0148K11
P148K11
Clone type
BAC
Contamination
none
Estimated length
100,898
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found