Clone Read LE_HBa0148C07_T7_101101

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0148C07_T7_101101
Primer
T7
ID from Seq. Facility
LE_HBa_148_C07-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
353 trimmed for vector and quality, 649 raw
Genbank Accession
DU091775
Sequence
>LE_HBa0148C07_T7_101101 (raw untrimmed)
CCTTTTATAATTAAAGGGGGGGGAGGGGAGGGGGCCAGAATAATCAATCATTTATCAACTACACCCCAATCACAAATAGTGTAGAAAAAAGTTAGGACAA
TAACTAAGATGTCAGGCTTACCTTGGAAAAAGGATAAGATCACTTTACAAGCCATTGGGTCTGCAACACCACCTTTCAGCTTTTCAACGAGTTCCTCGCA
TTTCCAATATAACTTGCGGCCTCTGGCGTCCTCACTTCTCTGGAAAATTCTCCTGACGAAATCGAGCTCTCTAACAAAAGCTTCAGCATCCCAAGTTGGA
GCACAGTGCTGGAACACATCTTTAACCCAACCTAATAACTCAGATGTCCTACTGCAAGCATGGCATCTGAAGAGCGTCTCGGCTGAGCTAACTCCAACCT
TAACAGAAGGGCCCGTTCCAATCTGCCCATTGCTAATTGGCACAATTCTTGTATGTGTCTATGAGAACAGAGATCACATCCAATCTCATCTCCTAATTGT
TGACCCTTATAATCAAAACTTATTTATTAATGCAACTTTGGATATTGTTGTTTATATCTTTATTTTCTTGTATTAATTTTCGGAGTATATTTTGTTCTGC
TGGGGATTAATTATTTCTAATTGCTTTTGTTTTTGCCTCTTTTAATCCT
>LE_HBa0148C07_T7_101101 (trimmed for quality and cloning vector)
ATAATCAATCATTTATCAACTACACCCCAATCACAAATAGTGTAGAAAAAAGTTAGGACAATAACTAAGATGTCAGGCTTACCTTGGAAAAAGGATAAGA
TCACTTTACAAGCCATTGGGTCTGCAACACCACCTTTCAGCTTTTCAACGAGTTCCTCGCATTTCCAATATAACTTGCGGCCTCTGGCGTCCTCACTTCT
CTGGAAAATTCTCCTGACGAAATCGAGCTCTCTAACAAAAGCTTCAGCATCCCAAGTTGGAGCACAGTGCTGGAACACATCTTTAACCCAACCTAATAAC
TCAGATGTCCTACTGCAAGCATGGCATCTGAAGAGCGTCTCGGCTGAGCTAAC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.964159
Expected error %
0.338043
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g07780.1 Score 139 E Value 3e-34 Identity 23.60% Align. Length 257bp (72.80%) Frame 1
68416.m00949 expressed protein
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g48160.1 Score 139 E Value 3e-34 Identity 23.30% Align. Length 257bp (72.80%) Frame 1
68418.m05949 tropomyosin-related contains weak similarity to Tropomyosin, muscle (Allergen Ani s 3). (Swiss-Prot:Q9NAS5) [Anisakis simplex]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP22954.1| Score 182 E Value 3e-45 Identity 31.50% Align. Length 266bp (75.35%) Frame 1
Potyvirus VPg interacting protein [Nicotiana benthamiana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAA96996.1| Score 139 E Value 2e-32 Identity 23.30% Align. Length 257bp (72.80%) Frame 1
unnamed protein product [Arabidopsis thaliana] ref|NP_199627.1| tropomyosin-related [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0148C07
Clone
Clone name
hba-148c7
LE_HBa0148C07
P148C07
Clone type
BAC
Contamination
none
Estimated length
70,803
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found