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Clone Read LE_HBa0148C04_T7_101095

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0148C04_T7_101095
Primer
T7
ID from Seq. Facility
LE_HBa_148_C04-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
611 trimmed for vector and quality, 834 raw
Genbank Accession
DU091772
Sequence
>LE_HBa0148C04_T7_101095 (raw untrimmed)
CTGGGTCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGAAGAGCTTCTTTCGAGTTTATCCTTTTTTGAGAATTGTGATTCCACAGAAA
ACTACCCTCCACTCTTTAGCTCCCTTCAAGCCATTACAGCTACCCTCAAGAATTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATAGTGGGAA
ACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTAGACAATCATATAAAGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGC
TCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTGATGATATCAAGTTTTATATTAGGGATTTGTTGTCAAGGGTCAAGATTGGGTCTTCAT
AGATGAAGAAACAAGGGTTGATTGCTTTGAATGAAATTATTCAAGAAGATGATAGGTATGTTAAAGTTGCAATTGAAATTGATAACCTTGTTTCTGTGTT
AGTGAGTTTTCTTGATTTGCAAGAAGATAATCTTCAAGAAGAAGCAGCTAAGGCATTATCTGTAATAGCAGGGTTTCAATCTTTTAGAAGTTGTTTGATT
TCTGCTGGAAAAATTTCCCCTTTGATTAGAGTTTTGGAGTGTGGGATTGGGTTGAGTAAGAAATTTGCCACTACGTGCTTGTAAATTTCTCATAGATAAT
TCCAAAAATGCTATGGTAATTTTCTTTTTTTGTTGTGGTTTTTGTTTTTGTATAACCCCTTTTTATTCGGTATATGCTTTAGCTTAGTCCCACTTTTCTG
CGGGGATCTTAAATGTCCTCATTACCTTTTGAAA
>LE_HBa0148C04_T7_101095 (trimmed for quality and cloning vector)
AGCTTGAAGAGCTTCTTTCGAGTTTATCCTTTTTTGAGAATTGTGATTCCACAGAAAACTACCCTCCACTCTTTAGCTCCCTTCAAGCCATTACAGCTAC
CCTCAAGAATTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATAGTGGGAAACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTA
GACAATCATATAAAGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGCTCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTG
ATGATATCAAGTTTTATATTAGGGATTTGTTGTCAAGGGTCAAGATTGGGTCTTCATAGATGAAGAAACAAGGGTTGATTGCTTTGAATGAAATTATTCA
AGAAGATGATAGGTATGTTAAAGTTGCAATTGAAATTGATAACCTTGTTTCTGTGTTAGTGAGTTTTCTTGATTTGCAAGAAGATAATCTTCAAGAAGAA
GCAGCTAAGGCATTATCTGTAATAGCAGGGTTTCAATCTTTTAGAAGTTGTTTGATTTCTGCTGGAAAAATTTCCCCTTTGATTAGAGTTTTGGAGTGTG
GGATTGGGTTG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.944145
Expected error %
0.830877
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g61350.1 Score 194 E Value 3e-50 Identity 18.20% Align. Length 548bp (89.69%) Frame 1
68414.m06914 armadillo/beta-catenin repeat family protein armadillo/beta-catenin-like repeats, Pfam:PF00514
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g05810.2 Score 105 E Value 2e-23 Identity 12.00% Align. Length 539bp (88.22%) Frame 1
68415.m00627 armadillo/beta-catenin repeat family protein weak similarity to CCLS 65 [Silene latifolia] GI:2570102; contains Pfam profile PF00514: Armadillo/beta-catenin-like repeat
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAL77674.1| Score 194 E Value 1e-48 Identity 18.20% Align. Length 548bp (89.69%) Frame 1
At1g61350/T1F9_16 [Arabidopsis thaliana] ref|NP_564774.1| armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] pir||B96639 protein T1F9.16 [imported] - Arabidopsis thaliana gb|AAC13906.1| T1F9.16 [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAL14389.1| Score 194 E Value 1e-48 Identity 18.20% Align. Length 548bp (89.69%) Frame 1
At1g61350/T1F9_16 [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0148C04
Clone
Clone name
hba-148c4
LE_HBa0148C04
C02HBa0148C04
P148C04
Clone type
BAC
Contamination
none
Estimated length
82,885
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found