Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone hba-209a1

Clone and library  
Clone
Clone name
hba-209a1
LE_HBa0209A01
P209A01
Clone type
BAC
Contamination
none
Estimated length
88,038
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
T0635Tomato-EXPEN 2000plate 7E7
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome
FISH map 
View on FISH map chromosome 4
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
242-02 1CompositeFluorescencePhase36.6%
242-04 1CompositeFluorescencePhase31.1%
242-08 1CompositeFluorescencePhase31.3%
242-09 1CompositeFluorescencePhase33.8%
242-10 1CompositeFluorescencePhase36.7%
242-11 1CompositeFluorescencePhase27.5%
242-12a 1CompositeFluorescencePhase27.6%
242-12b 1CompositeFluorescencePhase25.7%
242-13 1CompositeFluorescencePhase24.9%
242-14 1CompositeFluorescencePhase32.5%
242-15 1CompositeFluorescencePhase26.7%
242-21 1CompositeFluorescencePhase35.5%
242-24 1CompositeFluorescencePhase27.7%
242-25 1CompositeFluorescencePhase27.5%
242-26 1CompositeFluorescencePhase33.6%
242-28 1CompositeFluorescencePhase31.0%
242-31 1CompositeFluorescencePhase33.9%
Mean±sd30.8%±3.9%

Given an estimated length of 5.1µm for chromosome 4P and the mean percentage above, this BAC is approximately 1.6µm±0.2µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is not assigned to any sequencing project.
Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
none
HTGS phase
none
Sequencing Status
none
Sequencing Organization
not recorded
Full Sequence
Sequence not available.
End Sequences
Warnings
none
FTP
Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (22)
1484, 1579, 1952, 2173, 2336, 2446, 2693, 2793, 2793, 3032, 3171, 3343, 3610, 3713, 3993, 4177, 4739, 5906, 6630, 7967, 8126, 9382
Annotations  
Browse
LE_HBa0209A01 has no browsable sequence annotations
Download
temporarily unavailable
User commentsNone[Add comment] 
Search again  
Genomic Clone Search Select a genomic clone at random

full names, partial names, or lists of both

 More Criteria

Seq. Center Reported Status
Estimated Length
 and  bp
GenBank Accession (version insensitive)
e.g. AP009318.1 or AP009318
Sequencing on Chromosome
Show Only Clones With







Annotations
End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

Related Links: