Clone hba-57j16

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Clone
Clone name
hba-57j16
LE_HBa0057J16
C01HBa0057J16
P057J16
Clone type
BAC
Contamination
none
Estimated length
95,735
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg3894 : [coherent], 2 members:
LE_HBa0044E20, C01HBa0057J16
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
TG245Tomato-EXPEN 2000plate 5D5
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 1
FISH map 
View on FISH map chromosome 1
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
667-01 1CompositeFluorescencePhase80.4%
667-02 1CompositeFluorescencePhase77.5%
667-06 1CompositeFluorescencePhase78.1%
667-07 1CompositeFluorescencePhase78.3%
667-08 1CompositeFluorescencePhase77.1%
667-09 1CompositeFluorescencePhase79.4%
667-10 1CompositeFluorescencePhase79.3%
667-11 1CompositeFluorescencePhase76.7%
667-12 1CompositeFluorescencePhase79.2%
667-13 1CompositeFluorescencePhase79.0%
667-15 1CompositeFluorescencePhase79.2%
667-16 1CompositeFluorescencePhase80.3%
667-17 1CompositeFluorescencePhase79.6%
667-18 1CompositeFluorescencePhase81.8%
667-19 1CompositeFluorescencePhase77.8%
667-20 1CompositeFluorescencePhase77.6%
667-21 1CompositeFluorescencePhase80.5%
Mean±sd78.9%±1.4%

Given an estimated length of 20.1µm for chromosome 1Q and the mean percentage above, this BAC is approximately 15.9µm±0.3µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 1 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 1
HTGS phase
3 - finished
Sequencing Status
in_progress
Sequencing Organization
Uploaded by account 'manual'
Full Sequence
134,260 bp
C01HBa0057J16.2
AC238510.3 (GenBank) 		[View]
End Sequences
Warnings
  • sequence length 134,260 is 40.2% different from estimated length 95,735
 FTP
Chromosome 1 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (22)
1504, 1593, 1620, 1732, 1771, 2185, 2185, 2641, 2670, 2923, 3169, 3169, 3586, 3976, 4049, 5498, 5999, 6453, 7408, 8229, 11269, 12106
HindIII in silico (37)
1008, 1009, 1016, 1029, 1096, 1138, 1198, 1249, 1271, 1313, 1366, 1372, 1405, 1488, 1623, 1742, 2183, 2622, 2633, 2672, 2686, 2707, 2782, 2923, 3162, 3196, 3209, 3654, 4013, 4076, 5202, 5693, 6307, 7411, 8128, 11159, 11840
Fragment Lengths Match Score
0.75
Annotations  
Browse
LE_HBa0057J16 has no browsable sequence annotations
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temporarily unavailable
User commentsNone[Add comment] 
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End Sequences

e.g. crystallin
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Map
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 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

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