Clone hba-71d20
 Clone and library
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Clone and library
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| Physical mapping
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| Fingerprint Contig Builds (FPC) |
- not present in Tomato FPC (AGI 2005)
| Marker matches - overgo what's this? |
Plausible matches
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Additional Info | ||||||||
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Conflicted matches
None
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| Marker matches - BLAST |
| Marker | Evalue | Identity % | Score | Params |
|---|---|---|---|---|
| TG408 | 1e-79 | 1 | 291.00 | evalue cutoff: 1e-10; min len = 25; min identity=0.96 |
| Marker matches - manual |
| Physical map (from marker matches) |
| FISH map |
| FISH images |
| SC Spread ID | Images | Distance from centromere (percentage of arm length) | ||
|---|---|---|---|---|
| 492-01 1 | Composite | Fluorescence | Phase | 60.3% |
| 492-02 1 | Composite | Fluorescence | Phase | 62.1% |
| 492-07 1 | Composite | Fluorescence | Phase | 63.4% |
| 492-11 1 | Composite | Fluorescence | Phase | 63.5% |
| 492-13 1 | Composite | Fluorescence | Phase | 62.8% |
| 492-14 1 | Composite | Fluorescence | Phase | 61.9% |
| 492-18 1 | Composite | Fluorescence | Phase | 62.5% |
| 492-19 1 | Composite | Fluorescence | Phase | 61.8% |
| 492-21 1 | Composite | Fluorescence | Phase | 64.1% |
| 492-25 1 | Composite | Fluorescence | Phase | 65.9% |
| 492-28 1 | Composite | Fluorescence | Phase | 62.5% |
| 492-29 1 | Composite | Fluorescence | Phase | 61.7% |
| 492-30 1 | Composite | Fluorescence | Phase | 64.5% |
| 492-32 1 | Composite | Fluorescence | Phase | 63.1% |
| correction 2 | 67.9% | |||
| Mean±sd | 63.2%±1.4% | |||
Given an estimated length of 10.1µm for chromosome 10Q and the mean percentage above, this BAC is approximately 6.4µm±0.1µm from the chromosome centromere.
1Experiment conducted in the lab of Stephen Stack at Colorado State University.
2The position of this BAC has been adjusted slightly to reflect its location relative to the typical position of marker BAC LE_HBa0234C10.
| IL Mapping |
| Sequencing
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This clone is being sequenced by the Chromosome 10 Sequencing Project. (View projects)
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Sequencing Project
Chromosome 10
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HTGS phase
none
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Sequencing Status
none
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Sequencing Organization
not recorded
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Full Sequence
Sequence not available.
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End Sequences
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Warnings
none
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FTP | |
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Chromosome Assembly
this clone is not part of a chromosome assembly
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Restriction Fragments
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| Annotations
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Browse
LE_HBa0071D20 has no browsable sequence annotations
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Download
temporarily unavailable
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| User comments | [Add comment] |
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Working
