Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone hba-323e19

Clone and library  
Clone
Clone name
hba-323e19
LE_HBa0323E19
C11HBa0323E19
P323E19
Clone type
BAC
Contamination
none
Estimated length
101,014
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
not present in Tomato FPC (AGI 2005)
Marker matches - overgo what's this?None
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches)Not on Physical Map
FISH map 
FISH images 
SC Spread IDImagesDistance from centromere
(percentage of arm length)
127-07 1CompositeFluorescencePhase87.0%
127-10 1CompositeFluorescencePhase87.7%
127-18 1CompositeFluorescencePhase88.3%
127-22 1CompositeFluorescencePhase90.6%
127-23 1CompositeFluorescencePhase90.6%
127-24 1CompositeFluorescencePhase90.0%
127-25 1CompositeFluorescencePhase86.4%
127-26 1CompositeFluorescencePhase84.7%
Mean±sd88.2%±2.1%

Given an estimated length of 8.0µm for chromosome 11Q and the mean percentage above, this BAC is approximately 7.1µm±0.2µm from the chromosome centromere.

1Experiment conducted in the lab of Stephen Stack at Colorado State University.
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 11 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
Chromosome 11
HTGS phase
3 - finished
Sequencing Status
complete
Sequencing Organization
not recorded
Full Sequence
141,216 bp
C11HBa0323E19.1
AC171736.1 (GenBank)
[View]
End Sequences
None
Warnings
none
FTP
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (22)
1850, 2316, 2316, 2419, 2928, 2985, 3073, 3073, 3166, 3567, 3604, 4102, 4778, 5133, 5188, 5599, 5873, 5873, 7134, 7134, 8487, 10416
HindIII in silico (38)
1021, 1149, 1298, 1366, 1454, 1474, 1586, 1587, 1651, 1765, 1809, 1846, 1886, 2296, 2327, 2368, 2452, 2938, 3047, 3081, 3089, 3184, 3629, 3684, 4186, 4668, 4845, 4923, 4971, 5085, 5271, 5419, 5588, 5602, 7129, 7261, 8513, 10140
Fragment Lengths Match Score
0.75
Annotations  
Browse
LE_HBa0323E19 has no browsable sequence annotations
Download
temporarily unavailable
User commentsNone[Add comment] 
Search again  
Genomic Clone Search Select a genomic clone at random

full names, partial names, or lists of both

Related Links: