Clone hba-245e5
 Clone and library
|
Clone and library
|
| |||||||||||||||
| Physical mapping
|
| Fingerprint Contig Builds (FPC) |
- Tomato FPC (AGI 2005)
-
ctg5142 : [coherent], 2 members:
LE_HBa0140K15, C05HBa0245E05
| Marker matches - overgo what's this? |
Plausible matches
|
Additional Info | ||||||||
|
Conflicted matches
None
|
| Marker matches - BLAST |
| Marker matches - manual |
| Physical map (from marker matches) |
| FISH map |
| FISH images |
| SC Spread ID | Images | Distance from centromere (percentage of arm length) | ||
|---|---|---|---|---|
| 296-02b 1 | Composite | Fluorescence | Phase | 87.6% |
| 296-04a 1 | Composite | Fluorescence | Phase | 85.3% |
| 301-06 1 | Composite | Fluorescence | Phase | 89.0% |
| 296-07 1 | Composite | Fluorescence | Phase | 86.3% |
| 301-08 1 | Composite | Fluorescence | Phase | 86.1% |
| 296-09b 1 | Composite | Fluorescence | Phase | 89.9% |
| 296-10 1 | Composite | Fluorescence | Phase | 89.0% |
| 301-10 1 | Composite | Fluorescence | Phase | 87.1% |
| 296-11 1 | Composite | Fluorescence | Phase | 89.4% |
| 301-11 1 | Composite | Fluorescence | Phase | 88.8% |
| 296-17 1 | Composite | Fluorescence | Phase | 88.2% |
| 296-21 1 | Composite | Fluorescence | Phase | 88.6% |
| 301-22 1 | Composite | Fluorescence | Phase | 90.1% |
| 296-24 1 | Composite | Fluorescence | Phase | 87.0% |
| 296-25 1 | Composite | Fluorescence | Phase | 89.2% |
| 296-28 1 | Composite | Fluorescence | Phase | 89.7% |
| Mean±sd | 88.2%±1.5% | |||
Given an estimated length of 9.7µm for chromosome 9Q and the mean percentage above, this BAC is approximately 8.6µm±0.1µm from the chromosome centromere.
1Experiment conducted in the lab of Stephen Stack at Colorado State University.
| IL Mapping |
| Sequencing
|
This clone is being sequenced by the Chromosome 5 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.
Log in as a curator or sequencer to edit this clone's registry information.
|
Sequencing Project
Chromosome 5
|
HTGS phase
2 - fragmented, ordered
|
||
|
Sequencing Status
in_progress
|
Sequencing Organization
Indian Agricultural Research Institute
|
||
Full Sequence
|
End Sequences
|
||
Warnings
|
FTP | ||
|
Chromosome Assembly
this clone is not part of a chromosome assembly
|
Restriction Fragments
|
| Annotations
|
|
Browse
LE_HBa0245E05 has no browsable sequence annotations
|
|
Download
temporarily unavailable
|
| User comments | [Add comment] |
| Search again
|
| Genomic Clone Search | Select a genomic clone at random |
Working
