Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone hba-260c13

Clone and library  
Clone
Clone name
hba-260c13
LE_HBa0260C13
C12HBa0260C13
P260C13
Clone type
BAC
Contamination
none
Estimated length
177,219
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII
Ordering Information
BAC Clones
BAC clones can be ordered from the clone ordering page at TFGD
Physical mapping  
Fingerprint Contig Builds (FPC) 
Tomato FPC (AGI 2005)
ctg135 : [coherent], 1 members:
C12HBa0260C13
Marker matches - overgo what's this? 
Plausible matches
ProbeMapPlateWell
T1487Tomato-EXPEN 2000plate 1E8
 Additional Info
Overgo Plating Progress Report
Conflicted matches
None
  
Marker matches - BLASTNone
Marker matches - manualNone
Physical map (from marker matches) 
View on physical map chromosome 12
FISH mapNot on FISH map
FISH imagesNone
IL MappingNone
Sequencing  
This clone is being sequenced by the Chromosome 12 Sequencing Project. (View projects)
Log in as a curator or sequencer to edit this clone's registry information.
Sequencing Project
Chromosome 12
HTGS phase
2 - fragmented, ordered
Sequencing Status
in_progress
Sequencing Organization
Uploaded by account 'italy'
Full Sequence
139,554 bp
C12HBa0260C13.1
AC216294.1 (GenBank) 		[View]
End Sequences
None
Warnings
none
FTP
Chromosome 12 Sequencing repository (FTP)
Chromosome Assembly
this clone is not part of a chromosome assembly
  
Restriction Fragments
HindIII in vitro (31)
1079, 1390, 1624, 1819, 1987, 2018, 2158, 2390, 2554, 2947, 3136, 3213, 3693, 3758, 3825, 3988, 4152, 4368, 5135, 5670, 5936, 6080, 6080, 7566, 8227, 8227, 8788, 11228, 14232, 14232, 25719
HindIII in silico (34)
1067, 1083, 1155, 1194, 1394, 1625, 1809, 1822, 1957, 2008, 2153, 2163, 2390, 2571, 2959, 3137, 3213, 3253, 3714, 3782, 3855, 4032, 4183, 4353, 4895, 5314, 5624, 5830, 5920, 7199, 8095, 8285, 8732, 14314
Fragment Lengths Match Score
0.94
Annotations  
Browse
LE_HBa0260C13 has no browsable sequence annotations
Download
temporarily unavailable
User commentsNone[Add comment] 
Search again  
Genomic Clone Search Select a genomic clone at random

full names, partial names, or lists of both

 More Criteria

Seq. Center Reported Status
Estimated Length
 and  bp
GenBank Accession (version insensitive)
e.g. AP009318.1 or AP009318
Sequencing on Chromosome
Show Only Clones With







Annotations
End Sequences

e.g. crystallin
Overgo match to marker what's this?
Map
Map position
 and  cM
Chromosome / Linkage Group
  
IL Bin Mapping
Assigned to project
Mapped to chr
Mapped to bin
  
 Verification

Related Links: