This site uses cookies to provide logins and other features. Please accept the use of cookies by clicking Accept.
Tomato locus GDSL-motif lipase/hydrolase family protein 2
| Locus details | Download GMOD XML | Note to Editors | Annotation guidelines |
[loading edit links...]
|
[loading...]
|
|
Links to external databases
Links to external databases
|
| Registry name: | None | [Associate registry name] |
Notes and figures (0)
Notes and figures (0)
| [Add notes, figures or images] |
Success
The display image was set successfully.
| Image | Description | Type |
|---|
Accessions and images (0)
Accessions and images (0)
| [Associate accession] |
Accession name:
Would you Like to specify an allele?
| Alleles (0) | None | [Add new Allele] |
Associated loci (0)
Associated loci (0)
| [Associate new locus] |
[loading...]
|
| Associated loci - graphical view | None |
SolCyc links
SolCyc links
|
[loading...]
Sequence annotations
Sequence annotations
|
Genome features
Genome features
|
Genomic sequence
Genomic sequence
| unprocessed genomic sequence region underlying this gene |
>Solyc11g006250.1 SL2.50ch11:1004368..1006899
ATGGCCACACCTACTATTATTTTGAGCTTCTTGTTGATTTTTGGAGTGGCTATTTGTCAAAGTGAAGCTAGGGCATTTTTTGTGTTTGGTGATTCACTTGTTGATAGTGGAAATAATAATTATTTGGCTACTACTGCAAGGGCTGATTCACCACCTTATGGTATTGATTATCCAACACGTAGAGCAACTGGTCGTTTCTCTAATGGCTACAACATTCCTGACATTATCAGTTGAGTCCATACATCTCTTTTTTTAGTATTACATTTTCGTATGACTTATAGGTCACGAGGTTACTGATGTTTGCATCAGGATAGTATACGGTGATTAAGTCATGTTTTTTATCATAGAATAGTGGTGGTTCTTTTCTAAATTTTTGTGTGAATGTGAGATGTATGGTATGTACATTATATCAGATTCATATGAACCTAATATTTTCGATGTAGAATGTGAAGTTATGAAAATAATAAATATGAATTTTTAAGTTAATGCTAAGAACACATAGAAAGTTTGAATCTCGGATATACCTTTGATATTTGGAGAATTGTGGAGATATTGTAAAATTGTCTCTGTAAGTCACGAGTTCGAGCTGTGAAGTCGGATACTGATGCTTGTGCTAGGATAGATGACCTACATTACGTCCTCTTAGGGTGTAATCCTTTTATCGAACACTAGATGAACGTGAAATATTTTGTGTATTAAACTGTTTTTTGTTCTGATATTTAATTATGTGTGTTTTTGCCTCTTTTATGAAAGGTACTTATGAACACTAAAATTATAATGTTAACTTATTATAGATGATAATCTGTCTTATTTTTTAGATTACGTGTTCTACTTTATTTTTTAAGACAATTATCTATAGTTTTCTTTTATAAGTTTAATTTCTATATACATCGATGATATAAAGAATCTTTTAATTATAAGCTAATTTAAAAATACTAAAACTAATCGTTTATAAAAATTAAATCTAAAATTAACATAGACATAAGACAAGTTACATGTTATAAGCAATTATTTTCACTAGAAATATACACAAGGTAAATCCTTCTTCAAGGTTGACCTAATATTAATATAATATTTTTTTTTACATTTTCAGTATATATAAGTTAAATTTGTGATCGATCGATCAACTTCGATTATTTTACTCTTTTTTTTCAGGTCAACAAATTGGTTCATCAGAGTCACCACTACCTTACTTAGATCCAGCTCTTACTGGACAAAGACTTCTTGTTGGTGCTAACTTTGCATCTGCTGGAATTGGAATACTAAATGACACTGGAATCCAATTTGTACGTACAAAAAAACTTTAGCCTAAAATTCAAATTATTTCAAACATTTTAATAATTAATTTGTTCTGTTTAATGATAATATGCAGATTAATATTATTCGAATGCCACAACAATTGGCTTATTTTAGACAATATCAAAGTAGAGTAAGTGGCCTTATTGGTGAAGCAAATACTCAAAGACTTGTAAATCAAGCTCTTGTTCTTATGACTCTTGGAGGCAATGATTTTGTCAACAACTATTATCTTGTGCCCAATTCTGCGCGATCACGCCAATTTTCTATTCAAGATTATGTCCCTTATTTGATAAGAGAATATCGTAAAATCTTGATGGTACGTATTGAGTTTAGGCGATCTGTTAGTTGATAATTTCAGAGATTTCCCCTTTCTGACATAACATTCATTCAATACAAACATTTATAACAAATTTAAGTTTTTCACCAAACATAATTGGTTGTCAATTGCTAGCTGTTTTTAATTAAAGGTGACAAAGATTCAGAAAAACATTGAATGCACATTGAAGTTATTATGTTACTTTTTGTATAGGTAGATAATAATACAGAAGTTTTATTAATATACATTTGTTGCAGAATGTGTATAATCTTGGAGCTCGTCGTGTAATTGTAACTGGAACTGGACCGTTAGGTTGTGTTCCAGCAGAACTAGCTCAACGTAGCAGGAACGGGGAATGTTCACCCGAGTTGCAACGAGCTGCAGGCCTGTTTAACCCCCAGCTTACGCAAATGTTGCAGGGGTTAAATAGTGAACTAGGCAGCGATGTTTTTATTGCTGCAAATACACAACAAATGCATACGAATTTCATTACTAATCCACAAGCATATGGTAAACATCTTTTTTACTTTCGTAAAATCAATATAATGCTTTAAATTTACATCCCCTGTTCATGTTCAGTGGCAGAGCCAGGATTTTCATTATGCTGGCTCTGGGTTCTGGGCTCTGGCCTGTGGTTGACTAGTGTTATTAATATTGACAATGGATTCCATTTTTTTGTGACAGGATTTATAACATCAAAGGTAGCATGTTGTGGACAAGGACCATATAACGGTCTTGGTCTATGTACACCGCTCTCTAATTTGTGCCCGAATAGAGATGTTTACGCGTTTTGGGACCCGTTCCATCCATCTGAGAGGGCAAATAAGATCATTGTGCAGCAAATCATGTCTGGTACAACGGAGCTTATGAATCCAATGAATCTCAGTACGATTCTGGCTATGGATTCACATGCATAA
ATGGCCACACCTACTATTATTTTGAGCTTCTTGTTGATTTTTGGAGTGGCTATTTGTCAAAGTGAAGCTAGGGCATTTTTTGTGTTTGGTGATTCACTTGTTGATAGTGGAAATAATAATTATTTGGCTACTACTGCAAGGGCTGATTCACCACCTTATGGTATTGATTATCCAACACGTAGAGCAACTGGTCGTTTCTCTAATGGCTACAACATTCCTGACATTATCAGTTGAGTCCATACATCTCTTTTTTTAGTATTACATTTTCGTATGACTTATAGGTCACGAGGTTACTGATGTTTGCATCAGGATAGTATACGGTGATTAAGTCATGTTTTTTATCATAGAATAGTGGTGGTTCTTTTCTAAATTTTTGTGTGAATGTGAGATGTATGGTATGTACATTATATCAGATTCATATGAACCTAATATTTTCGATGTAGAATGTGAAGTTATGAAAATAATAAATATGAATTTTTAAGTTAATGCTAAGAACACATAGAAAGTTTGAATCTCGGATATACCTTTGATATTTGGAGAATTGTGGAGATATTGTAAAATTGTCTCTGTAAGTCACGAGTTCGAGCTGTGAAGTCGGATACTGATGCTTGTGCTAGGATAGATGACCTACATTACGTCCTCTTAGGGTGTAATCCTTTTATCGAACACTAGATGAACGTGAAATATTTTGTGTATTAAACTGTTTTTTGTTCTGATATTTAATTATGTGTGTTTTTGCCTCTTTTATGAAAGGTACTTATGAACACTAAAATTATAATGTTAACTTATTATAGATGATAATCTGTCTTATTTTTTAGATTACGTGTTCTACTTTATTTTTTAAGACAATTATCTATAGTTTTCTTTTATAAGTTTAATTTCTATATACATCGATGATATAAAGAATCTTTTAATTATAAGCTAATTTAAAAATACTAAAACTAATCGTTTATAAAAATTAAATCTAAAATTAACATAGACATAAGACAAGTTACATGTTATAAGCAATTATTTTCACTAGAAATATACACAAGGTAAATCCTTCTTCAAGGTTGACCTAATATTAATATAATATTTTTTTTTACATTTTCAGTATATATAAGTTAAATTTGTGATCGATCGATCAACTTCGATTATTTTACTCTTTTTTTTCAGGTCAACAAATTGGTTCATCAGAGTCACCACTACCTTACTTAGATCCAGCTCTTACTGGACAAAGACTTCTTGTTGGTGCTAACTTTGCATCTGCTGGAATTGGAATACTAAATGACACTGGAATCCAATTTGTACGTACAAAAAAACTTTAGCCTAAAATTCAAATTATTTCAAACATTTTAATAATTAATTTGTTCTGTTTAATGATAATATGCAGATTAATATTATTCGAATGCCACAACAATTGGCTTATTTTAGACAATATCAAAGTAGAGTAAGTGGCCTTATTGGTGAAGCAAATACTCAAAGACTTGTAAATCAAGCTCTTGTTCTTATGACTCTTGGAGGCAATGATTTTGTCAACAACTATTATCTTGTGCCCAATTCTGCGCGATCACGCCAATTTTCTATTCAAGATTATGTCCCTTATTTGATAAGAGAATATCGTAAAATCTTGATGGTACGTATTGAGTTTAGGCGATCTGTTAGTTGATAATTTCAGAGATTTCCCCTTTCTGACATAACATTCATTCAATACAAACATTTATAACAAATTTAAGTTTTTCACCAAACATAATTGGTTGTCAATTGCTAGCTGTTTTTAATTAAAGGTGACAAAGATTCAGAAAAACATTGAATGCACATTGAAGTTATTATGTTACTTTTTGTATAGGTAGATAATAATACAGAAGTTTTATTAATATACATTTGTTGCAGAATGTGTATAATCTTGGAGCTCGTCGTGTAATTGTAACTGGAACTGGACCGTTAGGTTGTGTTCCAGCAGAACTAGCTCAACGTAGCAGGAACGGGGAATGTTCACCCGAGTTGCAACGAGCTGCAGGCCTGTTTAACCCCCAGCTTACGCAAATGTTGCAGGGGTTAAATAGTGAACTAGGCAGCGATGTTTTTATTGCTGCAAATACACAACAAATGCATACGAATTTCATTACTAATCCACAAGCATATGGTAAACATCTTTTTTACTTTCGTAAAATCAATATAATGCTTTAAATTTACATCCCCTGTTCATGTTCAGTGGCAGAGCCAGGATTTTCATTATGCTGGCTCTGGGTTCTGGGCTCTGGCCTGTGGTTGACTAGTGTTATTAATATTGACAATGGATTCCATTTTTTTGTGACAGGATTTATAACATCAAAGGTAGCATGTTGTGGACAAGGACCATATAACGGTCTTGGTCTATGTACACCGCTCTCTAATTTGTGCCCGAATAGAGATGTTTACGCGTTTTGGGACCCGTTCCATCCATCTGAGAGGGCAAATAAGATCATTGTGCAGCAAATCATGTCTGGTACAACGGAGCTTATGAATCCAATGAATCTCAGTACGATTCTGGCTATGGATTCACATGCATAA
| Download sequence region |
Get flanking sequences on SL2.50ch11
|
mRNA Solyc11g006250.1.1
mRNA Solyc11g006250.1.1
|
Ontology terms
Ontology terms
| terms associated with this mRNA |
cDNA sequence
cDNA sequence
| spliced cDNA sequence, including UTRs |
>Solyc11g006250.1.1 GDSL esterase/lipase At5g33370 (AHRD V1 ***- GDL79_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL
ATGGCCACACCTACTATTATTTTGAGCTTCTTGTTGATTTTTGGAGTGGCTATTTGTCAAAGTGAAGCTAGGGCATTTTTTGTGTTTGGTGATTCACTTGTTGATAGTGGAAATAATAATTATTTGGCTACTACTGCAAGGGCTGATTCACCACCTTATGGTATTGATTATCCAACACGTAGAGCAACTGGTCGTTTCTCTAATGGCTACAACATTCCTGACATTATCAGTCAACAAATTGGTTCATCAGAGTCACCACTACCTTACTTAGATCCAGCTCTTACTGGACAAAGACTTCTTGTTGGTGCTAACTTTGCATCTGCTGGAATTGGAATACTAAATGACACTGGAATCCAATTTATTAATATTATTCGAATGCCACAACAATTGGCTTATTTTAGACAATATCAAAGTAGAGTAAGTGGCCTTATTGGTGAAGCAAATACTCAAAGACTTGTAAATCAAGCTCTTGTTCTTATGACTCTTGGAGGCAATGATTTTGTCAACAACTATTATCTTGTGCCCAATTCTGCGCGATCACGCCAATTTTCTATTCAAGATTATGTCCCTTATTTGATAAGAGAATATCGTAAAATCTTGATGAATGTGTATAATCTTGGAGCTCGTCGTGTAATTGTAACTGGAACTGGACCGTTAGGTTGTGTTCCAGCAGAACTAGCTCAACGTAGCAGGAACGGGGAATGTTCACCCGAGTTGCAACGAGCTGCAGGCCTGTTTAACCCCCAGCTTACGCAAATGTTGCAGGGGTTAAATAGTGAACTAGGCAGCGATGTTTTTATTGCTGCAAATACACAACAAATGCATACGAATTTCATTACTAATCCACAAGCATATGGATTTATAACATCAAAGGTAGCATGTTGTGGACAAGGACCATATAACGGTCTTGGTCTATGTACACCGCTCTCTAATTTGTGCCCGAATAGAGATGTTTACGCGTTTTGGGACCCGTTCCATCCATCTGAGAGGGCAAATAAGATCATTGTGCAGCAAATCATGTCTGGTACAACGGAGCTTATGAATCCAATGAATCTCAGTACGATTCTGGCTATGGATTCACATGCATAA
ATGGCCACACCTACTATTATTTTGAGCTTCTTGTTGATTTTTGGAGTGGCTATTTGTCAAAGTGAAGCTAGGGCATTTTTTGTGTTTGGTGATTCACTTGTTGATAGTGGAAATAATAATTATTTGGCTACTACTGCAAGGGCTGATTCACCACCTTATGGTATTGATTATCCAACACGTAGAGCAACTGGTCGTTTCTCTAATGGCTACAACATTCCTGACATTATCAGTCAACAAATTGGTTCATCAGAGTCACCACTACCTTACTTAGATCCAGCTCTTACTGGACAAAGACTTCTTGTTGGTGCTAACTTTGCATCTGCTGGAATTGGAATACTAAATGACACTGGAATCCAATTTATTAATATTATTCGAATGCCACAACAATTGGCTTATTTTAGACAATATCAAAGTAGAGTAAGTGGCCTTATTGGTGAAGCAAATACTCAAAGACTTGTAAATCAAGCTCTTGTTCTTATGACTCTTGGAGGCAATGATTTTGTCAACAACTATTATCTTGTGCCCAATTCTGCGCGATCACGCCAATTTTCTATTCAAGATTATGTCCCTTATTTGATAAGAGAATATCGTAAAATCTTGATGAATGTGTATAATCTTGGAGCTCGTCGTGTAATTGTAACTGGAACTGGACCGTTAGGTTGTGTTCCAGCAGAACTAGCTCAACGTAGCAGGAACGGGGAATGTTCACCCGAGTTGCAACGAGCTGCAGGCCTGTTTAACCCCCAGCTTACGCAAATGTTGCAGGGGTTAAATAGTGAACTAGGCAGCGATGTTTTTATTGCTGCAAATACACAACAAATGCATACGAATTTCATTACTAATCCACAAGCATATGGATTTATAACATCAAAGGTAGCATGTTGTGGACAAGGACCATATAACGGTCTTGGTCTATGTACACCGCTCTCTAATTTGTGCCCGAATAGAGATGTTTACGCGTTTTGGGACCCGTTCCATCCATCTGAGAGGGCAAATAAGATCATTGTGCAGCAAATCATGTCTGGTACAACGGAGCTTATGAATCCAATGAATCTCAGTACGATTCTGGCTATGGATTCACATGCATAA
Protein sequence
Protein sequence
| translated polypeptide sequence |
>Solyc11g006250.1.1 GDSL esterase/lipase At5g33370 (AHRD V1 ***- GDL79_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL
MATPTIILSFLLIFGVAICQSEARAFFVFGDSLVDSGNNNYLATTARADSPPYGIDYPTRRATGRFSNGYNIPDIISQQIGSSESPLPYLDPALTGQRLLVGANFASAGIGILNDTGIQFINIIRMPQQLAYFRQYQSRVSGLIGEANTQRLVNQALVLMTLGGNDFVNNYYLVPNSARSRQFSIQDYVPYLIREYRKILMNVYNLGARRVIVTGTGPLGCVPAELAQRSRNGECSPELQRAAGLFNPQLTQMLQGLNSELGSDVFIAANTQQMHTNFITNPQAYGFITSKVACCGQGPYNGLGLCTPLSNLCPNRDVYAFWDPFHPSERANKIIVQQIMSGTTELMNPMNLSTILAMDSHA*
MATPTIILSFLLIFGVAICQSEARAFFVFGDSLVDSGNNNYLATTARADSPPYGIDYPTRRATGRFSNGYNIPDIISQQIGSSESPLPYLDPALTGQRLLVGANFASAGIGILNDTGIQFINIIRMPQQLAYFRQYQSRVSGLIGEANTQRLVNQALVLMTLGGNDFVNNYYLVPNSARSRQFSIQDYVPYLIREYRKILMNVYNLGARRVIVTGTGPLGCVPAELAQRSRNGECSPELQRAAGLFNPQLTQMLQGLNSELGSDVFIAANTQQMHTNFITNPQAYGFITSKVACCGQGPYNGLGLCTPLSNLCPNRDVYAFWDPFHPSERANKIIVQQIMSGTTELMNPMNLSTILAMDSHA*
Gene model matches
Gene model matches
|
SGN Unigenes
SGN Unigenes
| [Associate new unigene] |
Unigene ID:
[loading...]
| GenBank accessions | None | [Associate new genbank sequence] |
| Other genome matches | None |
Literature annotations [2]
Literature annotations [2]
| [Associate publication] [Matching publications] |
Mining the surface proteome of tomato (Solanum lycopersicum) fruit for proteins associated with cuticle biogenesis.
Journal of experimental botany (2010)
Show / hide abstract
Show / hide abstract
The aerial organs of plants are covered by the cuticle, a polyester matrix of cutin and organic solvent-soluble waxes that is contiguous with the polysaccharide cell wall of the epidermis. The cuticle is an important surface barrier between a plant and its environment, providing protection against desiccation, disease, and pests. However, many aspects of the mechanisms of cuticle biosynthesis, assembly, and restructuring are entirely unknown. To identify candidate proteins with a role in cuticle biogenesis, a surface protein extract was obtained from tomato (Solanum lycopersicum) fruits by dipping in an organic solvent and the constituent proteins were identified by several complementary fractionation strategies and two mass spectrometry techniques. Of the approximately 200 proteins that were identified, a subset is potentially involved in the transport, deposition, or modification of the cuticle, such as those with predicted lipid-associated protein domains. These include several lipid-transfer proteins, GDSL-motif lipase/hydrolase family proteins, and an MD-2-related lipid recognition domain-containing protein. The epidermal-specific transcript accumulation of several of these candidates was confirmed by laser-capture microdissection and quantitative reverse transcription-PCR (qRT-PCR), together with their expression during various stages of fruit development. This indicated a complex pattern of cuticle deposition, and models for cuticle biogenesis and restructuring are discussed.
Yeats, TH. Howe, KJ. Matas, AJ. Buda, GJ. Thannhauser, TW. Rose, JK.
Journal of experimental botany.
2010.
61(13).
3759-71.
Ester Cross-Link Profiling of the Cutin Polymer of Wild-Type and Cutin Synthase Tomato Mutants Highlights Different Mechanisms of Polymerization.
Plant physiology (2017)
Show / hide abstract
Show / hide abstract
Cuticle function is closely related to the structure of the cutin polymer. However, the structure and formation of this hydrophobic polyester of glycerol and hydroxy/epoxy fatty acids has not been fully resolved. An apoplastic GDSL-lipase known as CUTIN SYNTHASE1 (CUS1) is required for cutin deposition in tomato (Solanum lycopersicum) fruit exocarp. In vitro, CUS1 catalyzes the self-transesterification of 2-monoacylglycerol of 9(10),16-dihydroxyhexadecanoic acid, the major tomato cutin monomer. This reaction releases glycerol and leads to the formation of oligomers with the secondary hydroxyl group remaining nonesterified. To check this mechanism in planta, a benzyl etherification of nonesterified hydroxyl groups of glycerol and hydroxy fatty acids was performed within cutin. Remarkably, in addition to a significant decrease in cutin deposition, mid-chain hydroxyl esterification of the dihydroxyhexadecanoic acid was affected in tomato RNA interference and ethyl methanesulfonate-cus1 mutants. Furthermore, in these mutants, the esterification of both sn-1,3 and sn-2 positions of glycerol was impacted, and their cutin contained a higher molar glycerol-to-dihydroxyhexadecanoic acid ratio. Therefore, in planta, CUS1 can catalyze the esterification of both primary and secondary alcohol groups of cutin monomers, and another enzymatic or nonenzymatic mechanism of polymerization may coexist with CUS1-catalyzed polymerization. This mechanism is poorly efficient with secondary alcohol groups and produces polyesters with lower molecular size. Confocal Raman imaging of benzyl etherified cutins showed that the polymerization is heterogenous at the fruit surface. Finally, by comparing tomato mutants either affected or not in cutin polymerization, we concluded that the level of cutin cross-linking had no significant impact on water permeance.
Philippe, G. Gaillard, C. Petit, J. Geneix, N. Dalgalarrondo, M. Bres, C. Mauxion, JP. Franke, R. Rothan, C. Schreiber, L. Marion, D. Bakan, B.
Plant physiology.
2017.
170(2).
807-20.
Ontology annotations (3)
Ontology annotations (3)
| [Add ontology annotations] |
[loading...]
Related views
Related views
|
- Genomic details
| User comments |
Please wait, checking for comments. (If comments do not show up, access them here)
Your Lists
Public Lists
List Contents
List Validation Report: Failed
Elements not found:
Optional: Add Missing Accessions to A List
Mismatched case
Click the Adjust Case button to align the case in the list with what is in the database.
Multiple mismatched case
Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.
List elements matching a synonym
Multiple synonym matches
Fuzzy Search Results
Synonym Search Results
Available Seedlots
Your Datasets
Public Datasets
Dataset Contents
Dataset Validation Failed
Elements not found:
Your Calendar
Having trouble viewing events on the calendar?
Are you associated with the breeding program you are interested in viewing?
Add New Event
Event Info
| Attribute | Value |
|---|---|
| Project Name: | |
| Start Date: | |
| End Date: | |
| Event Type: | |
| Event Description: | |
| Event Web URL: |
Edit Event
Login
Forgot Username
If you've forgotten your username, enter your email address below. An email will be sent with any account username(s) associated with your email address.
Reset Password
To reset your password, please enter your email address. A link will be sent to that address with a link that will enable you to reset your password.
Create New User
Working

Links to external databases
Links to external databases
