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Tomato locus beta-ketoacyl-coenzyme A synthase
| Locus details | Download GMOD XML | Note to Editors | Annotation guidelines |
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Links to external databases
Links to external databases
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beta-ketoacyl-coenzyme A synthase is on PhyloGenes
TomDelDB genotype frequencies in tomato populations. chromosome SL2.50ch02, position: 48651913
Please cite Razifard et al.
| Registry name: | None | [Associate registry name] |
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Alleles (1)
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SolCyc links
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Sequence annotations
Sequence annotations
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Genome features
Genome features
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Genomic sequence
Genomic sequence
| unprocessed genomic sequence region underlying this gene |
>Solyc02g085870.2 SL2.50ch02:48651127..48653367
CATTCATTTAATTTCTTTGCTCCTCACATTGTACTCTTTAAATTCTCACCAATCTTCCCTTTCTATTGTCTTAGCTACAATCAAACAATTTCCCTCCTTCTTTTCTAAAAGAAAAAATTGAAATTGAGAGAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTCTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAGAAACATGTTTGCCACCAGCAATTCATTATATCCCTCCAACGCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGTTATATTCTCTGCTATTGATGACTTGATGAAGAAAACAGGACTTAAGCCTAAAGATATCGATATTCTTGTCGTGAACTGTAGCTTGTTTTCTCCAACTCCGTCTTTATCTGCTATGGTTGTCAATAAGTACAAGTTGAGAAGTAACATAAAAAGTTACAATCTTTCTGGCATGGGATGTAGTGCTGGTCTAATCTCCATTGATTTGGCTAGAGATCTTCTTCAAGTTTTACCAAATTCATGTGCTTTAGTTGTGAGTACTGAAATCATCACTCCTAATTATTATCAAGGCTCAGAAAGAGCAATGTTACTTCCAAATTGTTTGTTCAGAATGGGTGGTGCTGCTATACTTTTGTCTAACAAGAGAAAAGATAGTGCAAGAGCTAAATACAGATTAATGCATGTGGTGAGAACCCACAAAGGTGCTGATGATAAGGCATTTAAATGTGTTTTTCAACAAGAAGATCCACAAGGGAAAGTTGGTATTAATCTATCAAAAGATCTTATGGTTATAGCAGGGGAAGCTTTGAAATCAAACATCACTACGATCGGTCCGTTGGTTCTTCCAGCTTCAGAGCAGCTTCTCTTCTTGTTCACTCTTATTGGAAGGAAGATTTTTAATCCCAAATGGAAAGCTTATATTCCTGATTTCAAACAAGCCTTCGAACATTTCTGCATCCATGCTGGTGGAAGAGCTGTTATTGATGAACTTCAGAAGAATCTTCAGTTATCTGCTGAACATGTTGAGGCTTCAAGAATGACTCTGCACAAATTTGGTAATGAACCACACTATTCACACTATGTTGAGTTTATTCGTCTTTGATACTTAAAAACACCAACTTAAAGTATATTCTGCTCCTTGTATGTATCCTTTTTCATTTAATTATATTTCGTCTGAACAGGTAACACATCATCGTCTTCATTATGGTATGAGATGAGTTACATCGAGGCGAAAGGAAGGATGAAAAAAGGTGATAGAATTTGGCAAATAGCATTTGGAAGTGGATTCAAGTGTAACAGTGCAGTTTGGAAGTGTAACCGCACAATCAAGACACCAACGGATGGACCATGGGATGATTGCATTGATAGGTACCCAGTGTTCATCCCAGAGATTGTCAAGCTCTAACAATTTTACACCTTACAAACTTATATATTCAAAAAAACAATAATAAAACAAGATATTAGGGGTGTTGTTAAATTGAGCAAGTACGAGACTTTGTTAATTAAACTTCATTAGAAATTAAACGTGTGTGAGCTCTCAGACGCATGGATAATTCAACGTGATCATCGATTTTCTTTCTTCTTTGTGGACGGCTGGAAAATGGTAGTTGGTTAAATGTCTGCAACATATATTCCATTTGCATTTTTAGTTGTTAGGGTATTATTTATTACTGTACGTCCAATGGAAAAACTGTACAATTATTTATTTTTCTCAGCTACTACAAATTTATATCATGTACTCTACCCCTCTTTCTTTAGATCAACAGTTATAAAATTCATGAATCATATACACGGAAATAGAAAGATAACTGTTTAATGATCATTGAAAGTTGTGCCCTTCTGCATTATGGAAATTAGTATTTTATACGACTC
CATTCATTTAATTTCTTTGCTCCTCACATTGTACTCTTTAAATTCTCACCAATCTTCCCTTTCTATTGTCTTAGCTACAATCAAACAATTTCCCTCCTTCTTTTCTAAAAGAAAAAATTGAAATTGAGAGAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTCTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAGAAACATGTTTGCCACCAGCAATTCATTATATCCCTCCAACGCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGTTATATTCTCTGCTATTGATGACTTGATGAAGAAAACAGGACTTAAGCCTAAAGATATCGATATTCTTGTCGTGAACTGTAGCTTGTTTTCTCCAACTCCGTCTTTATCTGCTATGGTTGTCAATAAGTACAAGTTGAGAAGTAACATAAAAAGTTACAATCTTTCTGGCATGGGATGTAGTGCTGGTCTAATCTCCATTGATTTGGCTAGAGATCTTCTTCAAGTTTTACCAAATTCATGTGCTTTAGTTGTGAGTACTGAAATCATCACTCCTAATTATTATCAAGGCTCAGAAAGAGCAATGTTACTTCCAAATTGTTTGTTCAGAATGGGTGGTGCTGCTATACTTTTGTCTAACAAGAGAAAAGATAGTGCAAGAGCTAAATACAGATTAATGCATGTGGTGAGAACCCACAAAGGTGCTGATGATAAGGCATTTAAATGTGTTTTTCAACAAGAAGATCCACAAGGGAAAGTTGGTATTAATCTATCAAAAGATCTTATGGTTATAGCAGGGGAAGCTTTGAAATCAAACATCACTACGATCGGTCCGTTGGTTCTTCCAGCTTCAGAGCAGCTTCTCTTCTTGTTCACTCTTATTGGAAGGAAGATTTTTAATCCCAAATGGAAAGCTTATATTCCTGATTTCAAACAAGCCTTCGAACATTTCTGCATCCATGCTGGTGGAAGAGCTGTTATTGATGAACTTCAGAAGAATCTTCAGTTATCTGCTGAACATGTTGAGGCTTCAAGAATGACTCTGCACAAATTTGGTAATGAACCACACTATTCACACTATGTTGAGTTTATTCGTCTTTGATACTTAAAAACACCAACTTAAAGTATATTCTGCTCCTTGTATGTATCCTTTTTCATTTAATTATATTTCGTCTGAACAGGTAACACATCATCGTCTTCATTATGGTATGAGATGAGTTACATCGAGGCGAAAGGAAGGATGAAAAAAGGTGATAGAATTTGGCAAATAGCATTTGGAAGTGGATTCAAGTGTAACAGTGCAGTTTGGAAGTGTAACCGCACAATCAAGACACCAACGGATGGACCATGGGATGATTGCATTGATAGGTACCCAGTGTTCATCCCAGAGATTGTCAAGCTCTAACAATTTTACACCTTACAAACTTATATATTCAAAAAAACAATAATAAAACAAGATATTAGGGGTGTTGTTAAATTGAGCAAGTACGAGACTTTGTTAATTAAACTTCATTAGAAATTAAACGTGTGTGAGCTCTCAGACGCATGGATAATTCAACGTGATCATCGATTTTCTTTCTTCTTTGTGGACGGCTGGAAAATGGTAGTTGGTTAAATGTCTGCAACATATATTCCATTTGCATTTTTAGTTGTTAGGGTATTATTTATTACTGTACGTCCAATGGAAAAACTGTACAATTATTTATTTTTCTCAGCTACTACAAATTTATATCATGTACTCTACCCCTCTTTCTTTAGATCAACAGTTATAAAATTCATGAATCATATACACGGAAATAGAAAGATAACTGTTTAATGATCATTGAAAGTTGTGCCCTTCTGCATTATGGAAATTAGTATTTTATACGACTC
| Download sequence region |
Get flanking sequences on SL2.50ch02
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mRNA Solyc02g085870.2.1
mRNA Solyc02g085870.2.1
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Ontology terms
Ontology terms
| terms associated with this mRNA |
cDNA sequence
cDNA sequence
| spliced cDNA sequence, including UTRs |
>Solyc02g085870.2.1 Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV5_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase
CATTCATTTAATTTCTTTGCTCCTCACATTGTACTCTTTAAATTCTCACCAATCTTCCCTTTCTATTGTCTTAGCTACAATCAAACAATTTCCCTCCTTCTTTTCTAAAAGAAAAAATTGAAATTGAGAGAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTCTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAGAAACATGTTTGCCACCAGCAATTCATTATATCCCTCCAACGCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGTTATATTCTCTGCTATTGATGACTTGATGAAGAAAACAGGACTTAAGCCTAAAGATATCGATATTCTTGTCGTGAACTGTAGCTTGTTTTCTCCAACTCCGTCTTTATCTGCTATGGTTGTCAATAAGTACAAGTTGAGAAGTAACATAAAAAGTTACAATCTTTCTGGCATGGGATGTAGTGCTGGTCTAATCTCCATTGATTTGGCTAGAGATCTTCTTCAAGTTTTACCAAATTCATGTGCTTTAGTTGTGAGTACTGAAATCATCACTCCTAATTATTATCAAGGCTCAGAAAGAGCAATGTTACTTCCAAATTGTTTGTTCAGAATGGGTGGTGCTGCTATACTTTTGTCTAACAAGAGAAAAGATAGTGCAAGAGCTAAATACAGATTAATGCATGTGGTGAGAACCCACAAAGGTGCTGATGATAAGGCATTTAAATGTGTTTTTCAACAAGAAGATCCACAAGGGAAAGTTGGTATTAATCTATCAAAAGATCTTATGGTTAtagcaggggAAGCTTTGAAATCAAACATCACTACGATCGGTCCGTTGGTTCTTCCAGCTTCAGAGCAGCTTCTCTTCTTGTTCACTCTTATTGGAAGGAAGATTTTTAATCCCAAATGGAAAGCTTATATTCCTGATTTCAAACAAGCCTTCGAACATTTCTGCATCCATGCTGGTGGAAGAGCTGTTATTGATGAACTTCAGAAGAATCTTCAGTTATCTGCTGAACATGTTGAGGCTTCAAGAATGACTCTGCACAAATTTGGTAACACATCATCGTCTTCATTATGGTATGAGATGAGTTACATCGAGGCGAAAGGAAGGATGAAAAAAGGTGATAGAATTTGGCAAATAGCATTTGGAAGTGGATTCAAGTGTAACAGTGCAGTTTGGAAGTGTAACCGCACAATCAAGACACCAACGGATGGACCATGGGATGATTGCATTGATAGGTACCCAGTGTTCATCCCAGAGATTGTCAAGCTCTAACAATTTTACACCTTACAAACTTATATATTCAAAAAAACAATAATAAAACAAGATATTAGGGGTGTTGTTAAATTGAGCAAGTACGAGACTTTGTTAATTAAACTTCATTAGAAATTAAACGTGTGTGAGCTCTCAGACGCATGGATAATTCAACGTGATCATCGATTTTCTTTCTTCTTTGTGGACGGCTGGAAAATGGTAGTTGGTTAAATGTCTGCAACATATATTCCATTTGCATTTTTAGTTGTTAGGGTATTATTTATTACTGTACGTCCAATGGAAAAACTGTACAATTATTTATTTTTCTCAGCTACTACAAATTTATATCATGTACTCTACCCCTCTTTCTTTAGATCAACAGTTATAAAATTCATGAATCATATACACGGAAATAGAAAGATAACTGTTTAATGATCATTGAAAGTTGTGCCCTTCTGCATTATGGAAATTAGTATTTTATACGACTC
CATTCATTTAATTTCTTTGCTCCTCACATTGTACTCTTTAAATTCTCACCAATCTTCCCTTTCTATTGTCTTAGCTACAATCAAACAATTTCCCTCCTTCTTTTCTAAAAGAAAAAATTGAAATTGAGAGAATTTTTTTGTTTGTTTGTTTGTGAAAATGCCAGAACCAGTCCCAAATTTCTCTAACTCTGTTAAGCTGAAATATGTGAAACTTGGTTACCAATACCTTGTTAATAATTTTCTTACTTTCTTGATTGTTCCCATAATGGCTGCTCTTATTATTCAGGTACTAAAATTAGGGCCTGAAGAGATTGTAAGTATTTGGAATTCACTTCACTTTGATCTCCTCCAAATCCTCTGTTCTTCTTTTCTCATCATTTTCATAGCCACAGTTTACTTCATGTCAAAACCAAGATCCATTTACTTAGTAGATTACTCATGTTACAAAGCCCCCGTTACGTGCAGAGTACCCTTTTCAACTTTCATGGAACATTCGCGTCTAATCTTGAAAGATAATCCAAAAAGTGTTGAATTTCAAATGCGAATTCTTGAAAGGTCAGGTCTTGGTGAAGAAACATGTTTGCCACCAGCAATTCATTATATCCCTCCAACGCCAACAATGGAGACTGCTAGAAATGAAGCTGAAGTTGTTATATTCTCTGCTATTGATGACTTGATGAAGAAAACAGGACTTAAGCCTAAAGATATCGATATTCTTGTCGTGAACTGTAGCTTGTTTTCTCCAACTCCGTCTTTATCTGCTATGGTTGTCAATAAGTACAAGTTGAGAAGTAACATAAAAAGTTACAATCTTTCTGGCATGGGATGTAGTGCTGGTCTAATCTCCATTGATTTGGCTAGAGATCTTCTTCAAGTTTTACCAAATTCATGTGCTTTAGTTGTGAGTACTGAAATCATCACTCCTAATTATTATCAAGGCTCAGAAAGAGCAATGTTACTTCCAAATTGTTTGTTCAGAATGGGTGGTGCTGCTATACTTTTGTCTAACAAGAGAAAAGATAGTGCAAGAGCTAAATACAGATTAATGCATGTGGTGAGAACCCACAAAGGTGCTGATGATAAGGCATTTAAATGTGTTTTTCAACAAGAAGATCCACAAGGGAAAGTTGGTATTAATCTATCAAAAGATCTTATGGTTAtagcaggggAAGCTTTGAAATCAAACATCACTACGATCGGTCCGTTGGTTCTTCCAGCTTCAGAGCAGCTTCTCTTCTTGTTCACTCTTATTGGAAGGAAGATTTTTAATCCCAAATGGAAAGCTTATATTCCTGATTTCAAACAAGCCTTCGAACATTTCTGCATCCATGCTGGTGGAAGAGCTGTTATTGATGAACTTCAGAAGAATCTTCAGTTATCTGCTGAACATGTTGAGGCTTCAAGAATGACTCTGCACAAATTTGGTAACACATCATCGTCTTCATTATGGTATGAGATGAGTTACATCGAGGCGAAAGGAAGGATGAAAAAAGGTGATAGAATTTGGCAAATAGCATTTGGAAGTGGATTCAAGTGTAACAGTGCAGTTTGGAAGTGTAACCGCACAATCAAGACACCAACGGATGGACCATGGGATGATTGCATTGATAGGTACCCAGTGTTCATCCCAGAGATTGTCAAGCTCTAACAATTTTACACCTTACAAACTTATATATTCAAAAAAACAATAATAAAACAAGATATTAGGGGTGTTGTTAAATTGAGCAAGTACGAGACTTTGTTAATTAAACTTCATTAGAAATTAAACGTGTGTGAGCTCTCAGACGCATGGATAATTCAACGTGATCATCGATTTTCTTTCTTCTTTGTGGACGGCTGGAAAATGGTAGTTGGTTAAATGTCTGCAACATATATTCCATTTGCATTTTTAGTTGTTAGGGTATTATTTATTACTGTACGTCCAATGGAAAAACTGTACAATTATTTATTTTTCTCAGCTACTACAAATTTATATCATGTACTCTACCCCTCTTTCTTTAGATCAACAGTTATAAAATTCATGAATCATATACACGGAAATAGAAAGATAACTGTTTAATGATCATTGAAAGTTGTGCCCTTCTGCATTATGGAAATTAGTATTTTATACGACTC
Protein sequence
Protein sequence
| translated polypeptide sequence |
>Solyc02g085870.2.1 Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV5_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase
MPEPVPNFSNSVKLKYVKLGYQYLVNNFLTFLIVPIMAALIIQVLKLGPEEIVSIWNSLHFDLLQILCSSFLIIFIATVYFMSKPRSIYLVDYSCYKAPVTCRVPFSTFMEHSRLILKDNPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTMETARNEAEVVIFSAIDDLMKKTGLKPKDIDILVVNCSLFSPTPSLSAMVVNKYKLRSNIKSYNLSGMGCSAGLISIDLARDLLQVLPNSCALVVSTEIITPNYYQGSERAMLLPNCLFRMGGAAILLSNKRKDSARAKYRLMHVVRTHKGADDKAFKCVFQQEDPQGKVGINLSKDLMVIAGEALKSNITTIGPLVLPASEQLLFLFTLIGRKIFNPKWKAYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAEHVEASRMTLHKFGNTSSSSLWYEMSYIEAKGRMKKGDRIWQIAFGSGFKCNSAVWKCNRTIKTPTDGPWDDCIDRYPVFIPEIVKL*
MPEPVPNFSNSVKLKYVKLGYQYLVNNFLTFLIVPIMAALIIQVLKLGPEEIVSIWNSLHFDLLQILCSSFLIIFIATVYFMSKPRSIYLVDYSCYKAPVTCRVPFSTFMEHSRLILKDNPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTMETARNEAEVVIFSAIDDLMKKTGLKPKDIDILVVNCSLFSPTPSLSAMVVNKYKLRSNIKSYNLSGMGCSAGLISIDLARDLLQVLPNSCALVVSTEIITPNYYQGSERAMLLPNCLFRMGGAAILLSNKRKDSARAKYRLMHVVRTHKGADDKAFKCVFQQEDPQGKVGINLSKDLMVIAGEALKSNITTIGPLVLPASEQLLFLFTLIGRKIFNPKWKAYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLSAEHVEASRMTLHKFGNTSSSSLWYEMSYIEAKGRMKKGDRIWQIAFGSGFKCNSAVWKCNRTIKTPTDGPWDDCIDRYPVFIPEIVKL*
Gene model matches
Gene model matches
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SGN Unigenes
SGN Unigenes
| [Associate new unigene] |
Unigene ID:
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GenBank accessions
GenBank accessions
| [Associate new genbank sequence] |
GQ214500 Solanum lycopersicum cultivar MicroTom CER6 gene, complete cds.
| Other genome matches | None |
Literature annotations [3]
Literature annotations [3]
| [Associate publication] [Matching publications] |
The developmental pattern of tomato fruit wax accumulation and its impact on cuticular transpiration barrier properties: effects of a deficiency in a beta-ketoacyl-coenzyme A synthase (LeCER6).
Plant physiology (2007)
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Cuticular waxes play a pivotal role in limiting transpirational water loss across the primary plant surface. The astomatous fruits of the tomato (Lycopersicon esculentum) 'MicroTom' and its lecer6 mutant, defective in a beta-ketoacyl-coenzyme A synthase, which is involved in very-long-chain fatty acid elongation, were analyzed with respect to cuticular wax load and composition. The developmental course of fruit ripening was followed. Both the 'MicroTom' wild type and lecer6 mutant showed similar patterns of quantitative wax accumulation, although exhibiting considerably different water permeances. With the exception of immature green fruits, the lecer6 mutant exhibited about 3- to 8-fold increased water loss per unit time and fruit surface area when compared to the wild type. This was not the case with immature green fruits. The differences in final cuticular barrier properties of tomato fruits in both lines were fully developed already in the mature green to early breaker stage of fruit development. When the qualitative chemical composition of fruit cuticular waxes during fruit ripening was investigated, the deficiency in a beta-ketoacyl-coenzyme A synthase in the lecer6 mutant became discernible in the stage of mature green fruits mainly by a distinct decrease in the proportion of n-alkanes of chain lengths > C(28) and a concomitant increase in cyclic triterpenoids. This shift in cuticular wax biosynthesis of the lecer6 mutant appears to be responsible for the simultaneously occurring increase of water permeance. Changes in cutin composition were also investigated as a function of developmental stage. This integrative functional approach demonstrates a direct relationship between cuticular transpiration barrier properties and distinct chemical modifications in cuticular wax composition during the course of tomato fruit development.
Leide, J. Hildebrandt, U. Reussing, K. Riederer, M. Vogg, G.
Plant physiology.
2007.
144(3).
1667-79.
Gene expression and metabolism in tomato fruit surface tissues.
Plant physiology (2008)
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The cuticle, covering the surface of all primary plant organs, plays important roles in plant development and protection against the biotic and abiotic environment. In contrast to vegetative organs, very little molecular information has been obtained regarding the surfaces of reproductive organs such as fleshy fruit. To broaden our knowledge related to fruit surface, comparative transcriptome and metabolome analyses were carried out on peel and flesh tissues during tomato (Solanum lycopersicum) fruit development. Out of 574 peel-associated transcripts, 17% were classified as putatively belonging to metabolic pathways generating cuticular components, such as wax, cutin, and phenylpropanoids. Orthologs of the Arabidopsis (Arabidopsis thaliana) SHINE2 and MIXTA-LIKE regulatory factors, activating cutin and wax biosynthesis and fruit epidermal cell differentiation, respectively, were also predominantly expressed in the peel. Ultra-performance liquid chromatography coupled to a quadrupole time-of-flight mass spectrometer and gas chromatography-mass spectrometry using a flame ionization detector identified 100 metabolites that are enriched in the peel tissue during development. These included flavonoids, glycoalkaloids, and amyrin-type pentacyclic triterpenoids as well as polar metabolites associated with cuticle and cell wall metabolism and protection against photooxidative stress. Combined results at both transcript and metabolite levels revealed that the formation of cuticular lipids precedes phenylpropanoid and flavonoid biosynthesis. Expression patterns of reporter genes driven by the upstream region of the wax-associated SlCER6 gene indicated progressive activity of this wax biosynthetic gene in both fruit exocarp and endocarp. Peel-associated genes identified in our study, together with comparative analysis of genes enriched in surface tissues of various other plant species, establish a springboard for future investigations of plant surface biology.
Mintz-Oron, S. Mandel, T. Rogachev, I. Feldberg, L. Lotan, O. Yativ, M. Wang, Z. Jetter, R. Venger, I. Adato, A. Aharoni, A.
Plant physiology.
2008.
147(2).
823-51.
Mining the surface proteome of tomato (Solanum lycopersicum) fruit for proteins associated with cuticle biogenesis.
Journal of experimental botany (2010)
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The aerial organs of plants are covered by the cuticle, a polyester matrix of cutin and organic solvent-soluble waxes that is contiguous with the polysaccharide cell wall of the epidermis. The cuticle is an important surface barrier between a plant and its environment, providing protection against desiccation, disease, and pests. However, many aspects of the mechanisms of cuticle biosynthesis, assembly, and restructuring are entirely unknown. To identify candidate proteins with a role in cuticle biogenesis, a surface protein extract was obtained from tomato (Solanum lycopersicum) fruits by dipping in an organic solvent and the constituent proteins were identified by several complementary fractionation strategies and two mass spectrometry techniques. Of the approximately 200 proteins that were identified, a subset is potentially involved in the transport, deposition, or modification of the cuticle, such as those with predicted lipid-associated protein domains. These include several lipid-transfer proteins, GDSL-motif lipase/hydrolase family proteins, and an MD-2-related lipid recognition domain-containing protein. The epidermal-specific transcript accumulation of several of these candidates was confirmed by laser-capture microdissection and quantitative reverse transcription-PCR (qRT-PCR), together with their expression during various stages of fruit development. This indicated a complex pattern of cuticle deposition, and models for cuticle biogenesis and restructuring are discussed.
Yeats, TH. Howe, KJ. Matas, AJ. Buda, GJ. Thannhauser, TW. Rose, JK.
Journal of experimental botany.
2010.
61(13).
3759-71.
Ontology annotations (2)
Ontology annotations (2)
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